Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006930.1 Hibiscus syriacus cultivar Beakdansim tig00017786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92764

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2014--2053
19
2.1
19
90
0
62
52
7
5
35
1.51
10787--10826
19
2.1
19
85
0
53
55
7
2
35
1.42
13210--13248
17
2.4
17
95
4
71
51
5
0
43
1.24
14072--14120
17
2.9
17
87
0
71
42
4
16
36
1.67
15357--15405
15
3.2
15
82
5
62
65
4
0
30
1.11
15346--15406
8
7.6
8
73
12
54
62
4
0
32
1.17
15372--15440
24
3.0
24
73
12
56
60
5
2
30
1.34
17815--17901
5
17.4
5
77
18
69
80
3
0
16
0.84
17812--17896
7
12.6
7
77
20
92
81
2
0
16
0.80
17815--17895
33
2.5
31
83
16
112
81
2
0
16
0.80
17815--17901
20
4.1
20
79
19
88
80
3
0
16
0.84
17937--18042
51
2.1
51
82
7
126
59
5
12
22
1.54
31029--31070
20
2.1
20
100
0
84
57
4
19
19
1.58
32322--32382
13
4.3
13
77
18
68
16
44
21
18
1.87
32321--32382
31
2.0
31
90
0
97
16
45
20
17
1.86
32336--32376
18
2.3
18
91
0
64
17
46
21
14
1.84
34883--34982
24
4.2
24
74
5
94
22
14
17
47
1.82
37052--37098
18
2.6
18
82
0
58
17
44
21
17
1.86
37075--37129
26
2.0
27
86
6
76
14
36
25
23
1.93
37075--37117
13
3.3
13
86
0
59
16
39
23
20
1.92
40805--40888
23
3.7
23
83
0
114
17
25
25
32
1.97
48595--48662
6
11.3
6
77
17
70
0
67
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48593--48707
51
2.2
52
78
7
128
0
63
2
33
1.08
48659--48705
12
3.9
12
97
0
85
0
59
6
34
1.23
50286--50406
2
60.5
2
100
0
242
50
0
0
49
1.00
50741--50827
29
2.9
29
81
13
104
45
0
18
35
1.50
51141--51185
23
2.0
23
91
8
74
31
4
0
64
1.13
51244--51271
11
2.5
11
100
0
56
75
0
0
25
0.81
54354--54417
29
2.3
26
84
10
83
48
4
1
45
1.32
62699--62763
31
2.1
31
97
0
121
55
3
18
23
1.56
62706--62785
31
2.6
31
86
4
90
57
5
12
25
1.55
72411--72461
26
2.1
25
89
10
79
39
25
11
23
1.89
83166--83209
21
2.1
21
95
0
79
20
2
9
68
1.28
83309--83344
10
3.6
10
92
0
54
75
8
11
5
1.19
83713--83753
16
2.5
17
80
15
50
34
0
4
60
1.18
89781--89805
12
2.1
12
100
0
50
28
16
16
40
1.89

Tables:   1

The End!