Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006933.1 Hibiscus syriacus cultivar Beakdansim tig00017795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57392

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2940--2989
19
2.7
19
78
12
50
74
2
6
18
1.12
20993--21123
68
1.9
68
90
0
208
47
6
12
33
1.67
24855--24903
22
2.2
22
92
0
80
16
26
22
34
1.95
26252--26501
125
2.0
125
96
0
464
22
15
22
40
1.91
26903--26930
7
4.0
7
100
0
56
42
0
0
57
0.99
29699--29781
31
2.7
31
78
10
89
50
9
10
28
1.69
29886--29913
6
4.7
6
100
0
56
82
0
0
17
0.68
32740--32789
24
2.1
24
85
7
66
24
2
14
60
1.45
42656--42715
25
2.4
25
97
0
111
30
23
38
8
1.84
42890--42939
24
2.1
24
85
7
66
22
2
16
60
1.46
44420--44474
25
2.2
25
83
6
67
70
7
0
21
1.11
44460--44500
20
2.2
18
86
8
55
73
4
2
19
1.13
44456--44516
17
3.5
17
81
14
63
73
4
3
18
1.14
47112--47154
23
1.9
22
90
4
68
58
0
2
39
1.11
47104--47163
29
2.1
29
84
6
77
55
3
5
36
1.38
51245--51288
20
2.3
19
81
18
56
29
0
6
63
1.20
52308--52359
25
2.1
25
100
0
104
32
23
15
28
1.95
52775--52821
20
2.4
19
79
10
58
51
10
19
19
1.75
52381--53015
182
3.6
181
90
4
960
42
14
17
26
1.87
53709--53777
35
2.0
35
100
0
138
28
11
13
46
1.78
55142--55188
14
3.3
14
91
5
76
21
8
59
10
1.57
55143--55188
15
3.1
15
93
3
76
19
8
60
10
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55273--55334
21
3.0
21
92
2
99
40
9
32
17
1.82
55367--55432
33
2.0
33
93
0
114
28
0
45
25
1.54
55641--55703
12
5.6
11
71
21
51
53
0
41
4
1.22
55620--55707
33
2.7
33
91
3
133
54
0
42
3
1.17
56646--56670
4
6.2
4
100
0
50
24
0
28
48
1.52
57249--57295
18
2.6
19
86
10
71
34
2
10
53
1.48

Tables:   1

The End!