genome.fa.s6935.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006935.1 Hibiscus syriacus cultivar Beakdansim tig00017799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70074

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663--4714	17	3.2	17	75	10	54	32	1	13	51	1.52
6269--6321	21	2.5	21	81	6	72	20	26	18	33	1.96
6311--6362	21	2.5	21	90	3	79	40	17	21	21	1.91
6296--6548	41	6.2	41	72	8	158	33	20	18	28	1.96
6373--6438	21	3.2	21	78	4	71	24	22	15	37	1.92
6434--6545	20	5.6	20	84	4	136	37	20	20	21	1.94
7061--7139	33	2.4	33	91	0	122	48	22	18	10	1.78
7157--7245	14	5.6	14	71	23	70	11	24	24	39	1.88
7140--7266	33	3.8	33	96	1	227	11	23	23	40	1.87
7140--7293	19	8.8	18	67	23	98	12	23	21	42	1.86
9421--9487	21	3.2	21	66	6	55	23	35	20	19	1.95
9369--9487	42	2.8	42	81	5	107	23	36	17	22	1.95
10837--10873	14	2.7	13	88	12	56	35	0	18	45	1.50
10986--11093	33	3.3	32	88	1	144	48	21	18	12	1.80
10986--11040	19	3.2	18	70	24	55	49	18	18	14	1.80
11124--11210	14	5.6	14	71	21	57	12	22	19	44	1.84
11103--11228	33	3.8	33	92	2	209	12	23	19	45	1.84
11103--11228	65	1.9	66	91	4	211	12	23	19	45	1.84
13754--13807	24	2.2	24	86	0	72	42	20	14	22	1.88
14673--14788	20	5.8	20	95	1	171	24	25	20	29	1.99
14639--14783	60	2.4	60	80	4	159	28	24	20	26	1.99
15011--15058	20	2.4	20	96	0	87	33	27	22	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15011--15066	20	2.8	20	91	0	76	37	23	21	17	1.94
16691--16769	42	1.9	42	92	2	133	18	15	41	24	1.89
17116--17222	20	5.4	20	85	1	126	37	25	20	16	1.93
17211--17269	14	3.9	14	76	20	64	50	23	15	10	1.74
17195--17286	33	2.8	33	93	0	148	48	23	16	10	1.77
17195--17291	19	5.7	18	72	22	84	47	23	17	11	1.80
17281--17377	19	5.6	19	68	22	79	13	17	21	47	1.82
17287--17377	33	2.8	33	94	0	155	12	16	21	49	1.78
17362--17416	20	2.8	19	83	8	65	16	23	23	36	1.94
17957--18004	18	2.7	18	90	0	78	16	12	45	25	1.82
19323--19365	20	2.2	20	86	0	59	53	18	18	9	1.70
19644--19687	22	2.0	22	95	0	79	18	15	45	20	1.85
19874--19987	20	5.7	20	75	10	106	22	16	27	33	1.96
19854--19989	41	3.3	41	79	6	168	22	16	25	35	1.95
19977--20049	21	3.5	21	86	1	94	21	21	17	38	1.93
19921--20009	41	2.2	41	85	4	117	20	19	24	35	1.95
24293--24351	20	3.0	20	97	0	109	47	18	13	20	1.82
24385--24424	15	2.7	15	92	0	71	37	20	22	20	1.94
27456--27578	31	4.0	31	90	2	185	36	21	20	21	1.95
28367--28411	21	2.1	21	87	0	63	15	24	28	31	1.96
31686--31808	31	4.0	31	90	2	185	37	22	19	20	1.94
32597--32641	21	2.1	21	87	0	63	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37102--37168	34	2.0	34	96	0	125	34	5	17	41	1.74
37542--37571	6	5.0	6	100	0	60	33	50	16	0	1.46
38069--38116	6	8.0	6	100	0	96	0	16	50	33	1.46
44255--44290	3	12.0	3	87	0	54	61	2	36	0	1.11
45891--45925	12	2.9	12	95	0	61	40	0	5	54	1.24
45894--45928	11	3.1	11	88	8	52	40	0	5	54	1.24
45986--46098	36	3.1	35	86	7	147	42	7	6	44	1.56
46003--46107	37	2.9	35	82	10	124	43	5	6	43	1.54
46109--46162	11	4.6	12	76	17	51	14	14	0	70	1.17
46114--46159	24	1.9	24	82	8	58	13	15	0	71	1.14
46137--46181	15	3.4	14	85	14	60	8	15	0	75	1.03
47428--47496	4	18.0	4	73	19	58	24	2	0	72	0.98
51713--51759	2	24.0	2	95	4	87	51	0	0	48	1.00
56108--56276	38	4.5	37	77	8	139	42	4	8	44	1.56
58610--58649	18	2.3	18	86	4	55	22	27	15	35	1.94
65698--65732	18	1.9	18	88	11	54	62	0	5	31	1.18
66456--66494	2	19.5	2	100	0	78	51	0	0	48	1.00
68293--68369	29	2.5	32	77	12	90	36	14	11	37	1.82

Tables:   1

The End!