genome.fa.s6937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006937.1 Hibiscus syriacus cultivar Beakdansim tig00017809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157939

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2462--2495	16	2.2	15	94	5	59	47	23	5	23	1.73
8063--8096	16	2.2	15	94	5	59	47	23	5	23	1.73
12693--12991	166	1.8	166	86	4	433	37	4	5	53	1.43
13009--13076	28	2.5	28	85	4	86	52	4	1	41	1.30
21388--21434	15	3.2	15	77	11	53	44	8	0	46	1.33
29566--29630	31	2.1	31	91	0	103	38	10	15	35	1.82
34512--34574	29	2.1	29	85	2	81	28	28	14	28	1.95
37285--37364	35	2.3	35	79	12	85	28	7	10	53	1.61
41602--41653	21	2.5	21	81	3	61	38	19	25	17	1.93
41642--41755	20	5.7	20	83	6	113	31	25	18	24	1.97
41639--41755	61	1.9	61	85	0	162	33	24	17	23	1.97
42274--42340	19	3.5	19	85	2	89	47	25	16	10	1.78
42336--42576	19	13.1	19	83	10	304	11	23	20	44	1.84
42464--42551	33	2.6	33	96	1	158	11	27	22	38	1.88
44721--44829	21	5.2	21	61	12	53	22	38	18	21	1.93
44669--44841	42	4.1	42	80	0	202	21	38	17	23	1.93
44666--44841	84	2.1	84	100	0	352	21	38	17	23	1.93
44736--44844	21	5.2	21	65	8	60	21	35	19	23	1.96
44666--44871	42	4.9	41	71	9	146	22	36	17	23	1.95
44666--44871	84	2.5	84	91	1	288	22	36	17	23	1.95
46228--46263	14	2.6	14	95	0	63	30	0	25	44	1.54
46370--46436	19	3.8	19	73	18	72	44	20	20	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46441--46591	19	8.7	19	64	21	80	15	21	20	42	1.89
46445--46571	33	3.8	33	89	4	202	14	22	19	43	1.88
46444--46572	66	2.0	66	96	0	240	15	21	20	42	1.89
49058--49111	24	2.2	24	90	0	81	40	20	16	22	1.91
49856--49906	20	2.5	20	93	0	84	33	19	27	19	1.96
49921--50048	33	3.8	33	87	1	175	45	17	23	13	1.84
50051--50123	18	4.2	19	75	22	79	12	16	23	47	1.80
50063--50169	33	3.3	33	89	3	146	11	20	22	45	1.82
50058--50156	19	5.8	18	73	21	70	11	19	22	47	1.80
50631--50700	20	3.5	20	98	1	133	32	27	24	15	1.95
50778--50815	20	1.9	20	94	0	67	13	10	28	47	1.76
50898--50934	14	2.6	14	86	0	56	48	21	0	29	1.50
52799--52866	20	3.5	19	82	6	82	38	23	23	14	1.92
53382--53426	18	2.5	18	85	0	63	13	15	42	28	1.85
54743--54801	20	3.0	20	87	0	73	42	22	18	16	1.89
55064--55107	22	2.0	22	95	0	79	18	15	45	20	1.85
55375--55425	20	2.5	20	83	0	66	17	23	19	39	1.92
56279--56529	134	1.9	132	82	4	317	48	3	5	42	1.43
57442--57467	4	6.5	4	100	0	52	73	0	0	26	0.84
59324--59375	22	2.4	22	96	0	95	19	13	25	42	1.87
59959--60059	33	3.1	33	100	0	202	47	11	20	19	1.81
61093--61123	16	1.9	16	100	0	62	51	19	9	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68766--68801	14	2.6	14	90	0	54	38	0	16	44	1.48
69240--69344	33	3.2	33	66	15	92	55	10	4	29	1.54
69229--69486	63	4.1	63	94	0	408	56	8	5	29	1.52
69889--69971	29	2.8	29	92	1	139	43	9	14	32	1.78
74659--74741	29	2.8	29	92	1	139	43	9	14	32	1.78
77278--77308	15	2.1	15	93	0	53	48	0	3	48	1.17
85120--85641	200	2.6	200	82	3	570	33	20	18	27	1.96
86747--86784	16	2.6	15	84	15	53	26	2	0	71	1.00
86746--86789	16	2.7	18	76	20	51	27	4	2	65	1.23
87166--87762	296	2.0	296	99	0	1176	39	11	19	28	1.87
88096--88151	27	2.0	28	86	3	78	48	10	14	26	1.76
89757--89804	24	2.0	24	95	0	87	47	16	6	29	1.71
106505--106607	36	2.9	36	97	0	188	42	16	17	23	1.88
114402--114504	36	2.9	36	97	0	188	42	16	17	23	1.88
116846--116897	18	2.8	19	75	21	56	46	9	17	26	1.79
120569--120642	20	3.6	20	69	7	58	32	21	10	35	1.88
129542--129702	64	2.5	63	84	7	182	34	18	20	26	1.95
130868--130962	31	3.1	31	80	3	111	26	17	21	34	1.95
134062--134259	40	4.9	40	94	1	344	36	7	5	51	1.53
134857--134896	12	3.2	12	93	6	71	15	55	15	15	1.71
134850--134896	13	3.6	13	91	8	78	17	53	17	12	1.73
138157--138188	15	2.1	16	94	5	57	6	25	18	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138939--138972	16	2.1	16	94	0	59	32	26	8	32	1.87
142525--142578	27	2.0	27	100	0	108	37	18	25	18	1.94
144907--144937	15	2.1	15	100	0	62	58	6	29	6	1.48
150489--150589	45	2.3	46	80	16	108	52	14	0	31	1.49
153568--153614	22	2.0	22	84	12	58	53	12	2	31	1.51

Tables:   1

The End!