genome.fa.s6939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006939.1 Hibiscus syriacus cultivar Beakdansim tig00017821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76511

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2969--3291	110	3.0	110	89	3	480	35	21	17	25	1.95
3793--4028	122	1.9	120	89	4	366	32	24	16	26	1.96
4086--4214	36	3.6	34	80	11	132	26	20	13	39	1.90
4111--4226	36	3.2	36	91	1	187	28	19	13	37	1.90
4143--4205	21	3.3	20	66	25	55	26	19	11	42	1.84
4245--4437	36	5.3	36	87	1	278	25	20	13	39	1.90
4244--4437	73	2.7	72	88	1	280	25	20	13	39	1.90
4476--4639	84	2.0	84	87	2	240	30	26	20	22	1.98
4479--4667	84	2.3	83	82	3	209	30	25	20	23	1.98
4888--4944	3	19.7	3	75	13	57	28	0	0	71	0.86
4887--4951	12	5.8	12	72	26	52	27	0	0	72	0.85
7491--7565	23	3.2	22	72	10	69	30	22	24	22	1.99
7503--7565	24	2.7	23	78	7	74	33	22	25	19	1.97
7462--7565	47	2.2	47	86	10	142	30	25	22	22	1.99
11245--11283	15	2.6	15	91	0	60	20	12	28	38	1.89
11323--11367	23	2.0	23	95	0	81	22	17	20	40	1.92
14007--14046	2	20.0	2	94	0	71	0	50	2	47	1.14
14564--14617	26	2.0	27	85	3	74	48	1	5	44	1.37
15499--15546	23	2.1	23	92	0	78	39	8	14	37	1.76
15975--16426	182	2.5	182	91	0	715	27	15	13	44	1.83
16297--16758	112	4.1	112	94	0	791	25	15	14	45	1.83
16297--16758	223	2.1	224	93	0	791	25	15	14	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17677--17713	15	2.4	16	90	4	58	35	0	0	64	0.94
18429--18472	19	2.3	19	96	0	79	27	20	31	20	1.97
18458--18623	91	1.8	91	84	7	230	28	15	24	30	1.96
20977--21041	33	2.0	33	93	0	112	29	15	12	43	1.83
21358--21392	14	2.5	14	90	0	52	40	14	5	40	1.69
21967--22004	18	2.2	18	90	4	60	26	28	28	15	1.96
28658--28709	25	2.1	25	96	0	95	40	17	17	25	1.90
29119--29190	24	3.0	24	83	0	99	52	16	12	18	1.74
29119--29210	48	1.9	48	84	0	121	51	15	13	20	1.76
32565--32605	2	21.0	2	95	5	75	48	0	0	51	1.00
33034--33077	23	1.9	23	85	0	61	54	13	20	11	1.69
35055--35141	2	44.0	2	95	2	158	49	1	0	49	1.08
35229--35272	2	22.0	2	100	0	88	50	0	0	50	1.00
36243--36285	15	2.7	15	79	13	50	46	9	20	23	1.79
37756--37840	2	43.0	2	97	2	163	49	0	0	50	1.00
48356--48384	2	14.5	2	100	0	58	51	0	0	48	1.00
48954--49001	20	2.4	20	96	0	87	25	22	29	22	1.99
52169--52238	34	2.1	34	97	0	131	31	18	5	44	1.73
52458--52484	2	13.5	2	100	0	54	48	0	0	51	1.00
53552--53586	2	17.5	2	100	0	70	48	0	0	51	1.00
53520--53593	16	4.4	16	77	5	58	39	1	4	55	1.27
55004--55037	17	2.0	17	88	11	52	29	2	0	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55045--55087	17	2.7	17	82	13	56	16	11	0	72	1.13
55137--55167	3	10.3	3	100	0	62	32	0	0	67	0.91
55162--55248	45	1.9	45	83	4	113	16	12	2	68	1.30
55163--55249	9	9.8	9	67	12	54	14	12	2	70	1.27
55196--55240	19	2.2	20	84	11	56	15	15	2	66	1.35
57081--57139	13	4.7	13	73	21	54	5	10	23	61	1.48
59703--59953	93	2.7	94	81	9	291	33	15	17	32	1.92
61099--61178	21	4.0	21	72	20	82	27	18	12	41	1.87
61111--61415	36	8.5	36	78	13	315	26	19	12	40	1.88
61330--61394	21	3.4	21	68	24	70	24	21	12	41	1.87
61222--61479	78	3.6	72	81	11	244	27	20	12	39	1.89
61355--61547	66	2.9	65	81	10	230	27	23	13	34	1.93
62007--62125	43	2.9	42	81	9	145	33	28	15	22	1.94
64218--64291	3	25.0	3	94	2	132	32	0	1	66	1.00
64547--64627	16	5.2	15	74	16	67	22	7	0	70	1.12
64553--64627	31	2.4	31	82	10	91	21	8	0	70	1.12
64677--64729	3	17.3	3	96	3	97	32	0	0	67	0.91
64725--64830	45	2.4	43	81	10	126	16	13	0	69	1.23
66358--66416	27	2.1	28	81	9	68	25	23	32	18	1.97
68547--68593	12	3.9	12	80	0	58	53	17	14	14	1.74
68547--68605	24	2.5	24	82	0	73	52	16	16	13	1.75
69904--69931	14	2.0	14	100	0	56	21	14	42	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70811--70866	2	28.5	2	96	3	105	50	0	0	50	1.00
72221--72260	14	2.8	15	78	21	50	40	0	0	60	0.97

Tables:   1

The End!