Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000694.1 Hibiscus syriacus cultivar Beakdansim tig00001351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102063

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8513--8555
17
2.6
16
78
10
50
67
0
30
2
1.03
10004--10100
50
2.0
49
85
6
133
32
20
15
30
1.94
10063--10101
20
1.9
21
89
5
62
35
20
15
28
1.93
10890--11166
54
5.1
54
88
2
369
31
19
15
33
1.93
11222--11250
15
1.9
15
100
0
58
41
24
6
27
1.80
11600--11650
20
2.5
20
78
12
59
25
33
11
29
1.91
14552--14592
17
2.4
17
87
4
55
19
7
2
70
1.22
19528--19604
24
3.3
24
72
17
90
45
5
11
37
1.63
19641--19708
2
34.0
2
100
0
136
50
0
0
50
1.00
23916--23945
12
2.6
11
90
10
51
33
0
0
66
0.92
24045--24085
19
2.2
19
100
0
82
53
0
29
17
1.44
28736--28769
16
2.1
17
94
5
61
50
0
0
50
1.00
30758--31055
147
2.0
147
97
0
560
41
9
16
32
1.80
33635--33674
12
3.3
12
80
13
55
22
20
10
47
1.79
33631--33683
24
2.2
24
86
0
79
28
16
11
43
1.83
33658--33728
36
2.0
36
82
0
88
23
18
14
43
1.86
33706--33763
29
2.0
29
100
0
116
20
17
17
44
1.86
33984--34044
30
2.0
29
87
12
88
55
13
4
26
1.57
43769--43809
20
2.0
21
86
13
59
19
2
4
73
1.13
47982--48026
23
2.0
23
86
0
63
26
26
26
20
1.99
47994--48309
150
2.1
149
94
1
553
34
21
17
26
1.95
48784--48821
20
1.9
20
88
0
58
10
31
34
23
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54935--54979
23
2.0
23
86
0
63
26
26
26
20
1.99
54947--55259
147
2.1
148
94
3
542
34
22
17
26
1.95
57114--57162
24
2.0
24
84
0
62
38
8
26
26
1.84
58178--58208
15
2.1
15
100
0
62
19
19
29
32
1.96
63262--63294
9
3.8
9
84
8
50
0
21
0
78
0.75
65330--65507
96
1.9
96
87
2
268
51
16
8
23
1.71
65576--65613
12
3.2
12
85
7
60
18
18
23
39
1.92
69515--69596
25
3.4
25
62
28
61
41
15
21
20
1.90
69514--69666
45
3.4
45
90
0
252
39
16
20
22
1.92
76511--76615
44
2.4
45
90
1
176
37
18
21
22
1.94
80403--80440
18
2.1
18
90
0
58
23
13
36
26
1.91
84557--84622
14
4.7
14
74
7
62
30
19
25
24
1.98
97945--97996
27
1.9
27
81
14
63
40
15
25
19
1.90
101962--102013
20
2.7
18
78
18
52
46
1
3
48
1.31

Tables:   1

The End!