genome.fa.s6940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006940.1 Hibiscus syriacus cultivar Beakdansim tig00017824_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56989

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3777--3813	19	1.9	19	89	10	58	64	0	5	29	1.15
4533--4575	19	2.3	19	84	11	54	67	2	4	25	1.22
4836--4949	20	5.7	20	83	6	113	31	25	18	24	1.97
4815--4954	61	2.3	60	80	3	163	32	24	19	24	1.98
5463--5528	19	3.5	18	85	8	87	46	25	16	10	1.79
5524--5574	19	2.7	19	96	0	93	11	21	21	45	1.84
5546--5641	32	3.0	31	80	7	113	12	26	21	39	1.89
5609--5666	20	2.9	20	80	10	64	13	24	18	43	1.87
5720--5793	25	2.6	28	71	20	73	18	5	18	56	1.60
7793--7943	21	7.2	21	62	10	58	22	37	19	21	1.95
7741--7943	42	4.8	42	80	2	194	22	36	17	22	1.94
7738--7913	84	2.1	84	98	0	343	21	38	17	23	1.93
7738--7943	84	2.5	84	91	1	288	22	36	17	22	1.95
9300--9326	14	1.9	14	100	0	54	37	0	25	37	1.57
9442--9488	19	2.5	19	96	0	85	44	21	21	12	1.85
9513--9630	19	6.7	19	66	19	76	13	23	20	42	1.88
9517--9610	33	2.8	33	98	0	179	12	24	19	43	1.85
11902--11926	12	2.1	12	100	0	50	0	28	0	72	0.86
12847--12916	21	3.4	21	92	2	106	37	15	22	24	1.93
12904--12995	20	4.6	20	73	2	76	39	20	18	21	1.93
13209--13276	20	3.4	20	68	8	66	41	22	20	16	1.90
13207--13282	40	1.9	40	97	0	143	44	19	19	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13209--13284	20	3.8	20	68	6	64	43	19	19	17	1.88
13193--13296	40	2.9	34	76	15	109	41	21	22	15	1.90
13307--13380	19	4.5	16	83	16	66	13	20	18	47	1.82
13303--13370	19	3.8	19	87	12	101	13	22	17	47	1.82
13507--13543	14	2.6	14	86	0	56	48	21	0	29	1.50
15408--15474	20	3.4	19	81	6	80	38	23	22	14	1.92
15497--15554	14	3.9	14	77	16	62	50	24	15	10	1.75
15448--15559	33	3.4	33	93	1	190	49	22	16	11	1.78
15590--15645	14	3.7	14	78	17	67	10	16	23	50	1.76
15571--15657	32	2.7	33	96	3	167	12	18	20	48	1.80
15659--15700	20	2.1	20	90	0	66	16	19	26	38	1.92
16182--16226	18	2.5	18	88	0	72	13	15	44	26	1.83
17547--17605	20	3.0	20	87	0	73	42	22	18	16	1.89
18079--18213	20	6.7	20	81	7	130	23	18	24	33	1.97
18079--18216	61	2.3	61	87	0	204	23	18	23	34	1.96
18079--18234	61	2.6	61	83	2	170	22	19	23	33	1.97
18284--18324	21	2.0	21	85	0	55	34	29	17	19	1.94
18587--18682	47	2.0	48	89	2	149	23	38	16	20	1.93
20420--20447	14	2.0	14	100	0	56	50	7	0	42	1.30
20501--20531	16	1.9	16	100	0	62	19	9	19	51	1.74
22055--22105	25	2.0	25	92	7	86	39	7	0	52	1.30
23683--23761	41	2.0	40	87	2	113	24	2	8	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29385--29418	11	3.1	11	95	0	59	0	2	17	79	0.86
35035--35117	43	1.9	43	95	0	148	24	2	9	63	1.36
40280--41486	622	1.9	620	88	2	1830	36	11	14	37	1.82
46937--47017	42	1.9	42	90	5	128	24	2	9	62	1.38

Tables:   1

The End!