genome.fa.s6941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006941.1 Hibiscus syriacus cultivar Beakdansim tig00017835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73299

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--281	60	4.8	59	72	10	245	41	14	11	32	1.82
1--281	116	2.4	119	93	2	480	41	14	11	32	1.82
2673--2711	12	3.2	12	82	7	51	41	0	0	58	0.98
7339--7772	213	2.0	215	92	4	736	48	10	13	27	1.75
15694--15866	60	2.9	60	82	1	213	34	21	1	41	1.64
15994--16174	59	3.0	60	76	7	170	40	5	23	29	1.77
19212--19356	38	3.8	38	88	0	182	40	18	19	22	1.92
22687--22732	24	1.9	24	90	0	74	45	13	17	23	1.83
24163--24286	60	2.1	60	80	8	137	30	18	8	42	1.79
24435--24592	60	2.6	60	78	5	158	40	7	20	31	1.81
26978--27019	2	21.0	2	100	0	84	50	0	0	50	1.00
29731--29768	20	1.9	20	88	0	58	18	26	10	44	1.82
31237--31460	102	2.2	101	86	2	306	41	11	19	28	1.86
31303--31763	138	3.4	137	85	6	625	43	12	18	26	1.85
31522--31765	36	6.9	36	75	12	229	42	11	18	27	1.85
31679--31776	36	2.7	37	84	7	96	40	13	16	29	1.86
32107--32352	36	7.0	36	75	12	224	43	11	17	27	1.84
32052--32348	138	2.2	137	89	1	443	41	11	18	27	1.85
31461--32634	585	2.0	585	95	0	2105	36	13	19	30	1.90
37515--37695	60	3.0	60	80	7	201	33	22	5	38	1.77
46195--46367	60	2.9	60	82	1	204	34	21	2	41	1.66
46496--46676	59	3.0	60	76	7	170	40	5	23	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49721--49865	38	3.8	38	88	0	182	40	18	19	22	1.92
53210--53255	24	1.9	24	90	0	74	45	13	17	23	1.83
54693--54816	60	2.1	60	80	8	137	30	18	8	42	1.79
54968--55125	60	2.6	60	78	5	158	40	7	20	31	1.81
58130--58199	2	35.0	2	100	0	140	50	0	0	50	1.00
60902--60939	20	1.9	20	88	0	58	18	26	10	44	1.82
62407--62630	102	2.2	101	88	2	333	40	12	20	27	1.87
62563--62934	36	10.9	36	70	19	244	42	11	19	26	1.86
62473--62932	138	3.4	137	85	6	643	42	12	19	25	1.86
62509--62871	65	5.5	64	71	16	247	42	11	19	26	1.86
62848--62945	36	2.7	36	85	4	108	39	13	17	29	1.87
63276--63521	36	7.0	36	75	12	233	42	11	18	27	1.84
63221--63517	138	2.2	137	90	1	461	41	12	19	26	1.86
62631--63803	585	2.0	584	95	0	2130	35	13	20	30	1.91
64888--65070	95	1.9	93	90	4	287	31	19	17	32	1.95
71472--71501	15	2.0	15	100	0	60	40	13	6	40	1.71

Tables:   1

The End!