Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006942.1 Hibiscus syriacus cultivar Beakdansim tig00017836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63627

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25--68
2
22.0
2
95
0
79
47
0
0
52
1.00
7145--7194
21
2.4
21
100
0
100
38
20
30
12
1.88
8763--8848
39
2.2
39
82
0
100
32
19
25
22
1.97
12560--12605
21
2.1
23
88
8
69
43
4
2
50
1.34
13713--13756
16
2.7
17
82
10
56
36
0
0
63
0.95
16559--16584
7
3.7
7
100
0
52
61
15
11
11
1.57
16570--16748
95
1.9
95
91
0
295
56
16
7
19
1.64
16569--16721
44
3.3
44
70
18
112
56
16
7
19
1.64
16730--16770
16
2.6
16
100
0
82
68
7
4
19
1.32
20215--20273
29
2.0
29
83
12
75
42
11
5
40
1.64
21599--21633
13
2.6
14
86
9
54
60
0
0
40
0.97
21640--21679
21
2.0
20
85
5
53
62
5
2
30
1.29
23748--23796
20
2.4
21
86
6
66
34
14
20
30
1.92
23821--23860
20
2.0
20
85
0
53
42
7
17
32
1.77
23873--23919
20
2.3
20
85
0
58
34
17
19
29
1.94
27414--27473
31
1.9
30
86
6
75
38
13
15
33
1.86
35021--35091
18
3.9
18
83
7
81
18
21
32
28
1.96
39656--39692
20
1.9
20
88
5
58
43
5
8
43
1.57
40487--40557
18
3.9
18
94
0
106
19
21
29
29
1.98
46699--46762
21
3.0
21
88
4
101
28
21
23
26
1.99
52914--52961
16
3.0
16
100
0
96
31
25
25
18
1.98
58136--58589
145
3.2
143
82
4
511
38
16
10
34
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58599--58669
21
3.3
21
64
21
56
26
22
11
39
1.88
58601--58689
44
2.0
44
100
0
178
23
24
11
40
1.87
58645--59275
145
4.5
142
82
6
705
36
15
11
37
1.83
59490--59542
21
2.6
21
87
3
72
30
13
13
43
1.82
60685--60807
41
2.9
43
83
6
162
30
10
9
48
1.70
60839--61087
101
2.5
98
85
7
313
30
11
14
43
1.80
61650--61700
23
2.1
25
92
7
88
35
7
13
43
1.73
62394--62434
6
6.8
6
91
0
64
34
14
0
51
1.43
62535--62611
33
2.4
32
82
8
95
48
25
7
18
1.75

Tables:   1

The End!