genome.fa.s6943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006943.1 Hibiscus syriacus cultivar Beakdansim tig00017844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58890

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396--440	19	2.4	19	96	0	81	13	13	31	42	1.82
5332--5376	20	2.2	20	80	7	56	22	2	6	68	1.24
13598--13787	95	2.0	95	97	0	362	28	17	8	45	1.78
21124--21160	13	2.8	13	95	0	65	35	21	24	18	1.96
23173--23231	29	2.0	29	96	0	109	32	11	20	35	1.89
24290--24338	22	2.2	22	78	7	55	28	0	20	51	1.48
28564--28601	13	2.9	13	100	0	76	63	0	23	13	1.30
29988--30042	12	4.5	12	75	20	60	74	1	1	21	1.01
29961--30042	38	2.2	38	93	2	139	69	2	3	24	1.17
34524--34560	18	2.0	19	94	5	67	8	37	0	54	1.30
36194--36532	82	4.1	81	77	3	241	32	13	20	33	1.91
36248--36443	81	2.4	81	80	5	207	32	15	20	31	1.94
36259--36540	83	3.4	83	78	3	266	34	12	19	34	1.89
36954--36998	22	2.0	22	95	0	81	48	4	15	31	1.65
39121--39318	43	4.6	43	82	3	238	13	38	16	30	1.88
39127--39318	86	2.2	86	96	0	348	14	38	16	31	1.88
40424--40571	5	30.0	5	95	2	273	39	20	0	39	1.53
49240--49361	40	3.0	40	95	0	217	23	14	26	35	1.94
49466--49590	47	2.8	45	83	8	155	37	8	24	30	1.84
55528--55577	26	1.9	26	83	0	64	30	8	4	58	1.45
55554--55605	23	2.4	22	80	6	61	21	0	7	71	1.11
56655--56695	16	2.5	17	80	7	50	29	2	0	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57231--58890	4	421.0	4	95	3	3050	49	25	0	24	1.50

Tables:   1

The End!