genome.fa.s6944.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006944.1 Hibiscus syriacus cultivar Beakdansim tig00017846_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68353

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75--588	3	176.3	3	80	11	597	63	0	35	0	0.98
529--734	105	2.0	105	88	0	304	50	6	27	15	1.69
631--693	3	21.0	3	90	0	63	57	0	34	7	1.28
2256--2299	19	2.4	19	92	3	72	29	0	9	61	1.27
5460--5520	23	2.7	23	94	0	113	29	8	24	37	1.84
5811--5874	23	2.9	22	86	6	85	18	17	25	39	1.92
8749--8794	18	2.6	18	96	0	83	0	45	19	34	1.51
9515--9589	3	24.7	3	80	2	87	61	2	4	32	1.28
12608--12655	21	2.3	21	96	0	87	41	12	18	27	1.86
17264--17332	21	3.3	21	97	0	129	42	13	18	26	1.87
17793--17832	20	2.0	20	85	0	53	37	0	2	60	1.11
22149--22247	3	33.3	3	85	2	137	59	0	4	36	1.16
22562--23318	113	6.7	113	96	0	1356	27	19	14	37	1.91
23992--24460	82	5.7	81	88	3	645	38	21	11	27	1.89
23995--24460	247	1.9	247	88	4	708	38	21	12	27	1.89
25243--25282	16	2.5	16	88	8	55	52	10	7	30	1.62
25597--25634	7	5.0	8	81	12	53	0	15	0	84	0.63
25597--25634	15	2.5	15	95	0	67	0	15	0	84	0.63
25598--25648	16	3.2	16	78	15	61	0	15	0	84	0.63
32904--32935	15	2.2	15	94	5	57	43	3	6	46	1.44
38366--38498	3	43.7	3	86	3	185	60	0	3	36	1.15
39186--39264	32	2.5	32	95	0	149	27	27	34	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39251--39345	29	3.3	29	95	0	163	13	30	32	23	1.93
39372--39488	50	2.4	50	90	5	188	20	36	19	23	1.95
39703--39741	16	2.3	18	86	8	55	38	0	5	56	1.22
39846--39937	46	2.0	48	83	12	120	42	0	10	46	1.39
41609--41654	23	1.9	24	86	8	67	41	2	4	52	1.33
41912--41975	18	3.4	18	75	8	74	50	9	0	40	1.35
42046--42072	14	1.9	14	100	0	54	74	14	3	7	1.18
42043--42075	17	1.9	17	88	11	50	72	15	3	9	1.21
42469--42517	21	2.3	21	82	3	62	51	18	0	30	1.47
42948--43015	35	1.9	35	93	0	118	25	16	30	27	1.96
43055--43079	12	2.1	12	100	0	50	24	60	0	16	1.36
43370--43454	29	2.9	29	94	3	145	16	28	38	16	1.90
47076--47127	24	2.2	24	86	3	70	50	1	3	44	1.31
47104--47169	32	2.1	32	85	0	87	45	10	1	42	1.48
47484--47529	24	1.9	24	81	0	56	43	4	2	50	1.34
52943--52992	26	2.0	26	88	4	75	42	10	10	38	1.72
53693--53722	2	15.0	2	100	0	60	50	0	0	50	1.00
58404--58451	13	3.8	13	78	10	55	27	18	31	22	1.97
63447--63583	36	3.9	35	85	7	163	20	27	21	30	1.98
63450--63586	71	1.9	70	85	7	188	19	26	21	32	1.97

Tables:   1

The End!