genome.fa.s6945.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006945.1 Hibiscus syriacus cultivar Beakdansim tig00017849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76508

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855--1906	17	3.1	16	81	10	68	40	11	7	40	1.70
2870--2909	20	2.0	21	95	5	73	37	20	15	27	1.92
3049--3074	10	2.6	10	100	0	52	38	23	23	15	1.92
9344--9406	29	2.1	30	83	13	78	38	9	14	38	1.78
10265--10346	21	3.9	21	100	0	164	24	23	28	24	2.00
10372--10405	12	2.8	12	86	0	50	26	17	14	41	1.88
15729--15809	20	3.7	20	73	22	72	38	2	4	54	1.35
15717--15842	48	2.6	48	89	2	189	37	3	5	53	1.40
15773--15811	20	2.0	20	100	0	78	35	2	5	56	1.35
15842--15907	34	1.9	34	93	0	114	39	3	6	51	1.42
16372--16415	6	8.0	5	87	12	52	22	2	2	72	1.07
16378--16418	16	2.5	17	88	8	66	24	2	2	70	1.11
16372--16415	11	4.0	10	85	14	52	22	2	2	72	1.07
16775--16830	21	2.7	21	88	5	78	17	44	7	30	1.76
17704--17742	3	14.0	3	84	15	57	35	0	0	64	0.94
17704--17742	13	2.9	14	85	14	55	35	0	0	64	0.94
17704--17745	5	7.8	5	97	2	57	35	0	0	64	0.94
19685--19891	80	2.7	80	79	6	219	24	15	37	22	1.93
25525--26099	54	10.6	54	90	0	781	32	19	17	29	1.95
31047--31087	18	2.3	18	100	0	82	9	39	12	39	1.76
32047--32137	46	2.0	46	86	2	130	27	23	20	28	1.99
35817--35860	21	2.1	21	82	0	52	9	43	15	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36964--37001	20	1.9	20	94	0	67	31	34	15	18	1.92
37021--37111	45	2.0	46	91	2	148	27	25	19	27	1.99
37032--37128	46	2.1	45	83	5	115	29	26	18	24	1.98
43136--43689	54	10.3	54	87	0	750	33	20	17	27	1.95
43910--43961	20	2.6	21	87	9	81	17	34	17	30	1.93
48261--48286	13	2.0	13	100	0	52	38	46	0	15	1.46
51933--51985	24	2.2	24	96	0	97	37	22	15	24	1.92
57309--57613	159	1.9	156	85	5	418	27	18	5	48	1.71
59265--59322	19	2.8	20	74	12	55	20	22	15	41	1.90
72763--72788	13	2.0	13	100	0	52	38	46	0	15	1.46
76411--76463	24	2.2	24	96	0	97	37	22	15	24	1.92

Tables:   1

The End!