genome.fa.s6946.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006946.1 Hibiscus syriacus cultivar Beakdansim tig00017851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83210

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961--1018	28	2.1	28	96	0	107	48	12	13	25	1.77
6474--6500	11	2.5	11	100	0	54	81	0	0	18	0.69
6609--6741	34	3.8	34	79	15	121	47	4	3	44	1.41
6742--6822	35	2.4	35	86	11	109	44	9	2	43	1.50
6773--6870	41	2.3	40	79	16	110	45	8	2	43	1.45
6724--6864	73	1.9	74	85	11	198	46	8	2	43	1.46
6849--6899	2	26.5	2	92	7	88	50	0	0	49	1.00
7529--8324	84	9.5	84	82	2	920	24	18	24	32	1.97
7545--8324	335	2.3	334	86	2	1062	24	18	24	32	1.98
9515--9700	95	2.0	94	87	3	266	30	18	18	32	1.95
13656--13747	39	2.5	37	74	17	84	71	1	6	20	1.14
15018--15071	21	2.6	21	96	0	99	37	3	0	59	1.15
15092--15391	35	7.9	39	74	13	168	44	6	4	44	1.49
15113--15335	40	5.6	40	72	16	162	44	6	3	45	1.46
15094--15321	81	2.9	77	77	15	220	44	6	3	45	1.45
15239--15397	36	4.5	34	79	14	146	44	7	4	43	1.52
20250--20312	3	21.0	3	83	6	83	28	1	1	68	1.08
20400--20470	25	2.8	25	95	0	133	39	19	14	26	1.90
27740--27807	4	17.2	4	71	19	54	51	23	0	25	1.48
27740--27807	16	4.3	16	88	1	102	51	23	0	25	1.48
28094--28197	35	2.9	35	85	1	136	30	20	13	35	1.91
28164--28360	105	1.9	105	87	4	290	29	20	10	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28681--28782	29	3.6	28	83	9	125	28	11	13	46	1.79
28738--28875	62	2.2	63	81	11	151	31	14	10	42	1.80
28992--29035	15	2.9	15	93	0	70	31	20	4	43	1.72
29459--29823	40	8.6	40	70	16	211	25	31	18	24	1.97
29459--29791	128	2.6	129	94	1	589	25	31	18	24	1.98
29969--30027	3	20.0	3	85	3	84	28	1	1	67	1.10
30115--30185	25	2.8	25	97	0	133	39	18	15	26	1.90
33165--33668	231	2.2	225	84	7	651	42	20	10	26	1.84
36399--36473	35	2.1	36	97	2	143	32	10	16	41	1.82
41396--41471	36	2.1	36	100	0	152	31	10	15	42	1.81
44887--45058	70	2.3	72	80	10	179	46	2	7	43	1.44
44919--45130	37	5.8	38	69	17	126	49	3	7	40	1.48
44926--45203	38	7.6	36	69	15	153	45	3	7	43	1.49
45032--45203	77	2.3	73	83	9	206	42	4	8	44	1.54
45193--45244	21	2.5	21	87	0	68	40	1	3	53	1.30
45032--45213	73	2.4	74	82	10	185	42	4	8	44	1.56
45278--45323	4	10.8	4	86	13	65	23	2	2	71	1.08
47291--47344	28	2.0	27	85	3	72	29	20	20	29	1.98
47967--48040	29	2.5	29	88	2	112	44	6	6	41	1.57
48119--48161	21	2.0	21	82	8	52	65	2	4	27	1.25
50605--50671	18	3.7	18	80	9	75	50	10	4	34	1.57
51564--51609	21	2.2	21	88	0	65	30	28	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51635--51679	22	2.0	22	86	4	63	31	33	26	8	1.87
52801--52927	31	4.1	31	75	10	116	27	18	20	33	1.96
52803--52930	62	2.1	61	82	8	161	28	19	19	32	1.96
52886--52982	30	3.2	30	88	1	113	22	20	24	31	1.98
52913--52985	30	2.4	30	95	0	128	24	20	24	30	1.99
56412--56457	21	2.2	21	88	0	65	30	28	26	15	1.96
56484--56528	22	2.0	22	86	4	63	31	33	26	8	1.87
57666--57793	31	4.1	31	78	9	143	26	17	21	34	1.96
57752--57848	30	3.2	30	88	1	113	22	20	24	31	1.98
57779--57851	30	2.4	30	95	0	128	24	20	24	30	1.99
58861--58922	2	31.0	2	100	0	124	50	0	0	50	1.00
58990--59374	85	4.4	86	82	5	337	37	9	19	33	1.84
59073--59376	85	3.6	84	84	4	342	37	8	20	33	1.84
59388--59716	77	3.9	85	81	9	370	37	9	15	37	1.80
62987--63027	14	3.1	14	83	16	61	48	0	0	51	1.00
62987--63025	11	3.2	12	89	10	53	51	0	0	48	1.00
62990--63027	12	3.0	13	84	7	60	50	0	0	50	1.00
70377--70436	31	2.0	30	81	15	70	50	0	6	43	1.28
76990--77046	29	2.0	29	86	6	80	43	0	8	47	1.34
81668--81751	35	2.5	33	78	16	91	27	8	9	54	1.61

Tables:   1

The End!