Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006947.1 Hibiscus syriacus cultivar Beakdansim tig00017852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82810

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7266--7320
23
2.4
23
88
11
78
16
30
23
29
1.96
11988--12181
93
2.1
93
87
4
275
35
15
16
31
1.91
13769--13858
31
2.9
31
80
3
92
34
20
17
27
1.95
16013--16370
83
4.3
82
81
7
332
33
22
18
25
1.96
15968--16370
168
2.4
169
81
6
516
34
22
18
24
1.96
18192--18281
9
9.6
9
73
13
58
5
8
3
82
0.94
18192--18281
10
8.4
10
72
15
56
5
8
3
82
0.94
18256--18295
14
2.9
14
88
3
55
7
5
7
80
1.03
18318--18360
16
2.6
17
82
13
54
16
2
0
81
0.79
18319--18360
17
2.6
16
88
3
57
14
2
0
83
0.75
24443--24629
52
3.7
51
89
2
286
45
13
13
26
1.82
24443--24629
51
3.7
52
89
2
281
45
13
13
26
1.82
24443--24629
103
1.8
102
89
1
293
45
13
13
26
1.82
28011--28050
20
2.0
20
90
4
64
52
7
20
20
1.70
35374--35405
15
2.1
15
94
0
55
65
0
9
25
1.22
37470--37500
7
4.4
7
100
0
62
25
0
74
0
0.82
41695--41747
27
2.0
27
92
0
88
16
15
41
26
1.88
47453--47478
11
2.4
11
100
0
52
26
34
0
38
1.57
50095--50208
36
3.2
36
94
1
194
46
18
4
30
1.68
50898--50922
9
2.8
9
100
0
50
20
36
0
44
1.52
53506--53644
64
2.3
59
85
8
174
61
16
11
10
1.57
54090--54129
21
1.9
21
89
0
62
52
5
5
37
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54561--54598
15
2.5
15
91
0
67
15
44
26
13
1.83
58052--58085
16
2.1
16
88
0
50
70
14
0
14
1.17
58107--58152
23
2.0
23
91
0
74
43
19
2
34
1.63
58107--58155
11
4.4
11
79
5
53
44
20
2
32
1.63
59886--59925
15
2.6
16
88
7
57
52
0
5
42
1.23
59954--60014
11
5.7
11
72
14
56
39
1
1
57
1.18
59986--60033
25
1.9
25
86
0
69
43
0
4
52
1.20
60054--60102
20
2.5
20
96
0
89
16
22
22
38
1.92
61285--61317
15
2.1
17
88
11
52
27
6
3
63
1.32
63601--63671
29
2.4
29
97
0
133
36
5
7
50
1.53
64837--64921
21
4.1
21
81
3
102
17
18
20
43
1.88
73114--73194
31
2.8
28
78
14
76
41
3
0
54
1.18
73154--73207
23
2.3
23
84
6
65
40
3
1
53
1.29
73159--73216
23
2.6
22
81
10
64
43
1
1
53
1.21
73121--73231
28
4.1
27
72
21
90
44
1
0
53
1.17
73123--73233
51
2.1
53
80
12
131
45
1
0
52
1.17
73304--73392
27
3.1
29
75
10
94
50
1
6
41
1.36
73448--73475
2
14.0
2
100
0
56
50
0
0
50
1.00
74809--74840
10
3.2
10
100
0
64
31
0
0
68
0.90
74807--74840
16
2.1
16
89
10
52
32
0
0
67
0.91
76450--76493
2
24.5
2
78
21
53
47
0
0
52
1.00
76450--76493
15
3.1
15
84
15
58
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76456--76491
13
3.0
12
92
8
56
47
0
0
52
1.00
76452--76499
15
3.1
15
80
17
53
43
2
0
54
1.12

Tables:   1

The End!