Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006948.1 Hibiscus syriacus cultivar Beakdansim tig00017853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63549

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6157--6372
77
2.9
74
88
5
283
28
1
11
58
1.42
8010--8052
21
2.0
21
86
8
61
32
25
25
16
1.96
8080--8116
19
1.9
19
88
0
56
24
35
29
10
1.89
8594--8914
103
3.1
103
95
0
588
25
13
24
37
1.91
8931--8993
23
2.7
23
87
4
92
20
26
26
25
1.99
14955--14997
21
2.0
21
86
8
61
32
25
25
16
1.96
15025--15062
20
1.9
20
88
0
58
23
34
31
10
1.89
15542--15858
103
3.1
103
97
0
598
25
12
24
36
1.91
15879--15941
23
2.7
23
87
4
92
20
26
26
25
1.99
20208--20238
2
15.5
2
93
0
53
45
0
3
51
1.17
20713--20946
115
2.0
114
95
0
414
33
11
14
39
1.83
25944--26172
43
5.3
43
73
10
128
26
21
21
30
1.99
26090--26196
43
2.5
43
86
4
135
24
19
21
34
1.96
26576--26637
21
3.0
21
85
0
88
3
41
16
38
1.64
32756--32796
19
2.2
19
100
0
82
43
4
31
19
1.72
35478--35538
26
2.2
28
82
8
81
32
6
1
59
1.33
36872--36903
14
2.4
14
90
10
50
43
0
9
46
1.35
42558--42585
14
2.0
14
100
0
56
28
28
7
35
1.84
43085--43171
23
4.0
22
74
15
74
77
4
14
3
1.07
45154--45432
60
4.6
59
82
7
294
38
21
13
26
1.90
45392--45735
124
2.8
123
89
0
526
35
25
14
24
1.93
47625--47676
26
1.9
28
85
14
74
26
34
0
38
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59692--59752
27
2.3
27
86
8
88
9
21
39
29
1.85
59801--59842
11
3.6
11
84
12
57
78
4
0
16
0.91
59806--59830
13
1.9
13
100
0
50
80
4
0
16
0.87
59801--59845
20
2.2
20
84
7
56
77
4
0
17
0.92
59918--60034
62
1.9
60
84
5
153
41
9
4
45
1.56
59893--59990
37
2.6
38
85
7
130
41
7
4
46
1.50
60041--60172
36
3.6
36
86
2
174
40
5
5
48
1.48
60041--60242
72
2.8
72
82
5
214
42
6
4
46
1.51
61806--61836
2
15.5
2
100
0
62
0
48
0
51
1.00
61968--62015
3
16.0
3
91
8
80
64
2
0
33
1.05
61972--62010
20
2.0
20
100
0
78
66
0
0
33
0.92

Tables:   1

The End!