genome.fa.s6949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006949.1 Hibiscus syriacus cultivar Beakdansim tig00017856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55788

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986--1057	20	3.8	20	83	10	89	16	29	34	19	1.94
13133--13159	2	13.5	2	100	0	54	51	0	0	48	1.00
19391--19442	26	2.0	26	85	3	70	32	3	5	57	1.40
20605--20687	40	2.1	40	100	0	166	19	26	7	46	1.75
25825--25915	25	3.7	24	70	21	71	65	5	4	24	1.32
28094--28134	18	2.3	18	91	4	66	65	0	4	29	1.13
29075--29171	21	4.7	21	85	2	142	40	18	25	15	1.90
29157--29234	41	1.9	41	86	0	111	39	19	16	24	1.91
29058--29209	62	2.5	61	87	6	191	40	18	23	18	1.92
29202--29254	20	2.7	20	85	5	72	26	26	18	28	1.98
29442--29485	22	2.0	22	91	8	72	22	45	13	18	1.84
29716--29753	20	1.9	20	88	0	58	13	15	21	50	1.78
31073--31117	18	2.5	18	88	0	72	26	44	15	13	1.83
31590--31656	20	3.4	20	81	2	73	38	23	22	14	1.92
31645--31702	14	3.9	14	75	16	62	50	24	15	10	1.75
31629--31719	32	2.8	33	91	3	157	48	21	17	12	1.80
31750--31816	19	3.5	19	83	4	89	14	23	23	37	1.93
31762--31816	20	2.8	19	89	5	83	16	25	23	34	1.95
33807--33924	33	3.4	33	84	5	137	44	19	22	14	1.86
33836--33969	19	7.8	19	78	21	163	46	17	21	14	1.84
33836--33969	52	2.7	52	94	5	233	46	17	21	14	1.84
33888--33969	33	2.5	33	95	0	146	46	18	21	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33988--34044	20	2.9	20	92	2	89	15	22	21	40	1.91
35104--35157	24	2.2	24	90	0	81	24	16	20	38	1.92
37646--37776	19	7.7	19	66	23	94	42	19	22	14	1.88
37646--37772	33	3.8	33	88	4	202	42	19	22	14	1.88
37647--37779	66	2.0	66	97	0	248	41	19	22	16	1.90
37772--37813	19	2.2	19	91	0	66	16	19	23	40	1.91
37781--37847	19	3.8	19	75	18	81	11	22	20	44	1.84
37954--38004	14	3.6	14	94	0	84	43	25	0	31	1.55
39398--39478	40	2.0	40	85	2	108	23	17	38	20	1.93
39389--39478	41	2.2	41	82	2	110	24	16	37	21	1.93
41474--41534	20	3.1	19	79	9	68	44	18	24	13	1.85
41499--41594	33	2.9	33	89	3	140	39	25	23	11	1.88
41605--41674	19	3.9	19	73	19	69	11	18	22	47	1.81
42166--42279	20	5.7	20	84	2	120	23	19	24	32	1.97
42166--42282	61	1.9	61	87	0	171	23	18	23	34	1.96
42268--42360	20	4.5	21	78	4	100	17	24	18	39	1.91
42268--42360	41	2.3	41	100	0	150	17	24	18	39	1.91
42166--42300	61	2.2	61	82	2	164	22	20	23	33	1.97
49452--50334	6	148.8	6	96	2	1655	16	0	16	66	1.25
52130--52177	2	24.0	2	100	0	96	50	0	0	50	1.00
53317--53344	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!