Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000695.1 Hibiscus syriacus cultivar Beakdansim tig00001355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80144

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
752--814
24
2.6
25
87
5
78
19
26
26
26
1.99
5259--5304
23
2.0
22
83
4
56
32
2
19
45
1.62
5606--5643
20
1.9
20
88
0
58
23
15
18
42
1.89
5729--5791
24
2.7
24
85
2
83
20
26
26
25
1.99
10423--10468
23
2.0
22
83
4
56
32
2
17
47
1.60
10917--10963
24
2.0
24
86
0
67
21
25
23
29
1.99
12805--12852
14
3.5
14
81
13
64
43
0
2
54
1.12
12794--12841
3
16.0
3
85
8
62
37
0
2
60
1.09
15106--15149
19
2.3
19
84
7
54
31
6
0
61
1.22
15121--15194
22
3.4
22
67
29
52
29
5
1
63
1.25
15098--15164
30
2.2
30
82
10
75
32
7
0
59
1.25
19786--19819
17
1.9
17
94
5
59
82
0
17
0
0.67
22101--22370
92
2.9
92
91
3
427
28
13
22
35
1.92
24894--24948
22
2.5
22
90
0
92
36
10
12
40
1.79
25625--27177
76
20.5
76
97
0
2900
21
21
21
35
1.96
27302--27378
24
3.0
26
90
7
106
40
0
1
58
1.06
27302--27367
3
22.0
3
80
11
73
37
0
1
60
1.06
33127--33366
81
3.0
81
87
1
322
28
23
12
35
1.91
33307--33844
68
7.9
68
87
1
731
31
23
12
32
1.92
34209--34383
59
3.0
57
86
4
235
33
18
12
36
1.88
34710--34757
22
2.3
22
89
7
73
29
25
14
31
1.95
34798--34850
19
2.7
19
85
8
72
22
32
18
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34797--34850
20
2.8
20
86
8
76
22
33
18
25
1.97
34766--34903
73
1.9
73
86
0
195
27
23
18
31
1.97
46026--46064
15
2.6
15
100
0
78
41
7
15
35
1.76
46224--46352
36
3.6
35
77
12
120
46
6
14
32
1.70
46370--46946
258
2.2
256
82
6
687
36
15
13
33
1.87
54532--54571
20
2.0
20
90
0
62
52
7
0
40
1.30
54752--54826
35
2.1
35
100
0
150
58
8
10
22
1.57
58597--58634
19
2.0
20
94
5
69
15
21
31
31
1.94
58554--58715
64
2.5
64
81
5
186
27
16
25
30
1.96
64122--64306
74
2.5
74
83
7
225
23
20
28
27
1.99
65139--65242
51
2.0
51
98
0
199
37
9
13
39
1.77
65632--65673
14
2.9
14
86
10
50
73
4
0
21
1.01
67156--67194
14
2.8
14
88
0
51
35
0
12
51
1.40
67257--67331
22
3.1
23
79
14
73
48
0
1
50
1.09
67521--67570
22
2.2
24
79
13
61
52
6
0
42
1.26
67627--67685
23
2.4
25
83
5
77
40
0
6
52
1.28
71816--71862
15
3.0
16
68
6
51
36
29
10
23
1.89
73897--73951
25
2.2
26
77
9
60
70
0
5
23
1.07
74009--74051
11
4.1
11
82
11
54
67
0
2
30
1.03
74011--74051
3
14.3
3
80
10
50
65
0
2
31
1.05
74011--74048
20
1.9
20
94
0
67
65
0
2
31
1.06
73991--74057
23
3.0
23
75
14
70
67
0
4
28
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74119--74143
2
12.5
2
100
0
50
52
0
0
48
1.00
74254--74291
17
2.2
17
95
0
67
63
2
0
34
1.09
75660--76601
105
9.0
105
88
2
1312
22
18
26
33
1.97
75813--76601
316
2.5
315
91
1
1296
21
18
26
32
1.97

Tables:   1

The End!