Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006950.1 Hibiscus syriacus cultivar Beakdansim tig00017862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114309

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10404--10487
42
2.0
42
90
2
134
27
3
9
59
1.45
15684--16881
620
1.9
612
85
4
1561
36
11
14
36
1.82
19472--19538
11
6.2
11
78
3
82
20
2
17
58
1.52
19476--19546
21
3.3
21
78
3
88
16
2
22
57
1.52
22927--22960
16
2.1
16
88
0
50
35
11
8
44
1.72
31152--31235
44
1.9
44
95
0
150
23
2
9
64
1.35
39919--39985
11
6.2
11
78
3
82
20
2
17
58
1.52
39923--39993
21
3.3
21
78
3
88
16
2
22
57
1.52
43359--43392
16
2.1
16
88
0
50
35
11
8
44
1.72
44165--44190
2
13.0
2
100
0
52
50
0
0
50
1.00
45358--45408
17
2.9
17
82
14
59
68
0
5
25
1.12
47108--47157
21
2.3
22
86
3
75
40
14
20
26
1.90
47224--47339
36
3.2
36
92
1
187
38
12
20
28
1.88
48653--48913
95
2.7
95
85
3
328
30
17
17
34
1.93
53016--53061
3
15.7
3
95
4
85
67
0
0
32
0.91
53104--53140
16
2.2
17
90
4
58
72
0
8
18
1.08
55063--55103
7
5.9
7
94
0
73
56
0
29
14
1.39
57006--57040
18
1.9
18
88
11
54
57
0
2
40
1.14
58315--58437
66
1.9
63
83
9
158
34
19
20
25
1.96
59181--59231
24
2.1
24
100
0
102
15
13
19
50
1.77
64123--64218
22
4.5
22
85
5
119
14
22
31
31
1.94
64185--64219
18
1.9
18
94
0
61
17
20
34
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65994--66056
17
3.8
17
82
2
74
46
6
11
36
1.65
80769--80885
45
2.6
45
100
0
234
26
11
27
35
1.90
86636--86672
14
2.7
14
87
4
58
2
10
27
59
1.44
87661--87721
31
2.0
31
90
0
95
31
11
8
49
1.68
89093--89261
82
2.1
82
96
3
315
35
14
15
34
1.88
89450--89497
25
1.9
25
83
8
62
29
12
4
54
1.56
99764--99826
29
2.2
29
100
0
126
66
6
6
20
1.36
105086--105119
2
17.0
2
100
0
68
50
0
0
50
1.00
105318--105357
3
13.7
3
89
5
64
32
2
0
65
1.06
105482--105538
21
2.7
21
89
5
80
42
24
21
12
1.87
114014--114096
41
2.0
43
80
4
98
32
12
22
32
1.91
114102--114222
37
3.2
37
82
5
145
32
14
27
26
1.94

Tables:   1

The End!