Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006951.1 Hibiscus syriacus cultivar Beakdansim tig00017866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74643

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4494--4564
24
3.0
24
81
4
72
4
16
43
35
1.68
4657--4696
17
2.3
17
86
4
53
55
2
0
42
1.13
11454--11495
19
2.2
19
86
0
57
16
14
16
52
1.75
17506--17550
2
22.5
2
100
0
90
51
0
0
48
1.00
18004--18071
20
3.3
20
67
4
55
32
23
17
26
1.97
18065--18126
20
3.1
20
86
9
90
38
25
17
17
1.92
18040--18136
40
2.4
40
81
8
108
41
23
17
17
1.90
18152--18206
21
2.7
20
83
8
67
50
3
18
27
1.63
18145--18211
20
3.3
20
79
4
80
47
10
17
23
1.79
21597--21637
12
3.4
12
83
10
57
56
0
0
43
0.99
23432--23469
19
2.0
20
84
5
51
63
2
2
31
1.22
23457--23507
22
2.4
21
71
12
50
64
5
7
21
1.41
24988--25218
117
2.0
117
90
0
363
24
23
14
37
1.93
25696--25738
17
2.7
15
79
13
50
16
9
4
69
1.31
25825--25906
42
2.0
41
85
2
110
29
18
23
29
1.97
25781--26516
239
3.1
237
87
2
1010
34
16
16
32
1.91
29039--29075
11
3.5
11
92
3
58
43
0
0
56
0.99
29029--29096
13
5.2
13
71
13
50
44
1
1
52
1.19
29398--29439
20
2.1
20
86
0
57
52
0
0
47
1.00
29425--29468
22
2.0
22
86
8
63
54
0
0
45
0.99
29408--29498
26
3.5
26
75
11
71
53
2
0
43
1.12
30282--30344
23
2.7
23
95
0
108
49
0
17
33
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30285--30407
23
5.6
23
71
13
107
43
0
20
35
1.58
30300--30492
63
3.0
63
96
0
341
37
1
23
37
1.64
30336--30436
31
3.2
31
63
18
82
34
1
24
38
1.67
30558--30599
14
3.0
14
96
0
75
28
2
14
54
1.52
31240--31309
21
3.3
20
88
5
95
21
24
35
18
1.95
46754--47116
51
7.0
51
85
5
433
33
17
23
26
1.96
46701--47117
105
4.0
105
79
8
393
33
17
23
25
1.96
46756--47116
156
2.3
155
85
4
501
33
17
23
26
1.96
46869--47167
54
5.6
54
80
7
186
34
18
23
23
1.96
51259--51327
28
2.4
28
80
7
75
60
2
0
36
1.11
51287--51345
17
3.5
17
72
9
57
59
1
0
38
1.08
63894--63946
27
2.0
26
85
3
70
28
18
24
28
1.98
64157--64212
25
2.3
24
84
3
67
19
7
5
67
1.34
69728--69752
13
1.9
13
100
0
50
40
0
4
56
1.18

Tables:   1

The End!