genome.fa.s6952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006952.1 Hibiscus syriacus cultivar Beakdansim tig00017868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59503

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809--841	13	2.4	14	85	10	50	39	0	21	39	1.53
752--924	82	2.1	84	91	3	280	35	2	17	43	1.65
892--927	14	2.6	14	95	0	63	33	0	22	44	1.53
1031--1161	33	3.8	32	90	9	181	45	18	22	13	1.84
1031--1212	19	10.4	19	77	18	191	46	18	21	13	1.83
1173--1226	14	3.6	14	72	18	54	48	20	22	9	1.78
1154--1231	32	2.4	33	95	2	140	46	19	23	11	1.82
1221--1417	20	10.7	19	79	13	225	16	21	17	44	1.86
1221--1417	39	5.3	38	83	11	225	16	21	17	44	1.86
1259--1389	59	2.2	59	93	2	219	16	22	14	46	1.83
1318--1450	33	3.8	34	83	10	135	13	21	20	45	1.85
1423--1496	20	3.7	20	71	16	62	21	17	25	35	1.95
3939--3992	24	2.2	24	90	0	81	40	20	16	22	1.91
4678--4949	20	13.4	20	82	4	312	19	16	25	38	1.92
4676--4949	41	6.8	41	91	3	330	18	16	25	39	1.92
4678--5010	82	4.1	82	86	5	387	19	16	24	39	1.92
4958--5010	20	2.7	20	94	5	90	15	18	22	43	1.87
17056--17153	23	4.4	22	72	13	76	34	25	22	17	1.95
17094--17162	23	3.0	23	73	0	75	34	21	24	18	1.96
18688--18840	23	6.8	23	81	3	107	18	24	23	33	1.97
18695--18802	46	2.4	44	81	9	126	20	25	22	32	1.98
26519--26548	2	14.5	2	93	6	51	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27075--27129	2	28.0	2	96	3	103	50	0	0	49	1.00
27931--28043	60	1.9	60	86	0	154	30	15	20	33	1.93
28252--28345	29	3.2	29	64	14	66	34	15	15	34	1.90
29871--29900	15	2.0	15	100	0	60	60	13	0	26	1.34
30687--30754	32	2.1	32	94	0	118	44	17	11	26	1.83
32404--32477	37	2.0	37	97	0	139	31	13	22	32	1.93
34051--34085	13	2.7	13	100	0	70	54	8	5	31	1.54
34577--34808	115	2.0	116	89	4	353	24	13	23	38	1.91
43768--43818	23	2.3	23	96	3	95	19	37	23	19	1.94
49339--49422	22	3.9	22	73	17	68	22	29	26	21	1.99
49350--49398	23	2.1	23	92	7	82	18	38	24	18	1.93
58200--58245	18	2.6	18	89	0	65	65	0	6	28	1.17
59179--59221	22	1.9	23	85	4	61	44	13	0	41	1.44
59296--59330	13	2.8	12	83	8	52	25	8	5	60	1.49

Tables:   1

The End!