Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006953.1 Hibiscus syriacus cultivar Beakdansim tig00017870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68768

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10714--11171
55
8.6
55
79
8
378
32
14
23
29
1.94
10843--11122
51
5.4
51
81
9
298
32
14
25
28
1.94
10891--11148
51
5.0
51
74
12
163
31
13
25
29
1.94
10843--11131
155
1.9
156
84
6
399
33
14
24
27
1.94
11372--11421
3
16.3
3
80
12
57
34
0
2
64
1.05
12949--12974
4
6.5
4
100
0
52
23
0
0
76
0.78
13244--13286
2
21.5
2
90
0
68
44
0
4
51
1.22
13246--13286
16
2.6
16
100
0
82
43
0
4
51
1.23
23197--23237
3
13.7
3
85
10
57
63
2
0
34
1.08
23782--23849
29
2.3
29
87
5
93
38
19
5
36
1.76
23803--23859
29
2.0
28
89
3
87
36
19
5
38
1.74
29641--29694
24
2.4
22
75
6
54
38
1
1
57
1.20
30935--30980
9
5.6
9
75
19
55
17
26
21
34
1.95
30932--30986
16
3.4
16
87
0
83
16
25
21
36
1.94
32671--32701
14
2.2
14
94
0
53
16
0
0
83
0.64
40591--41194
52
11.6
52
94
0
1057
28
25
16
28
1.97
41061--41144
28
3.2
28
62
14
70
33
25
15
26
1.95
41190--41468
55
5.1
55
90
2
465
27
28
15
28
1.96
41190--41468
107
2.6
110
92
3
483
27
28
15
28
1.96
42751--42850
8
12.8
8
75
9
66
8
12
1
79
0.99
42772--42849
8
9.8
8
82
14
67
10
11
0
78
0.97
42772--42840
17
4.4
17
77
18
69
10
11
0
78
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42786--42846
30
2.0
31
87
9
90
13
11
0
75
1.05
42772--42850
9
8.7
9
75
16
74
10
11
0
78
0.97
43971--44008
3
12.3
3
94
5
67
2
34
0
63
1.09
51232--51278
2
23.5
2
100
0
94
48
0
0
51
1.00
53591--53685
39
2.4
39
96
0
172
21
32
17
28
1.96
57613--57663
24
2.1
25
85
3
68
29
13
9
47
1.75
58722--58758
2
18.5
2
100
0
74
51
0
0
48
1.00
59014--59090
31
2.5
31
95
0
136
44
10
14
31
1.79
63080--63261
41
4.5
41
74
7
158
19
20
22
37
1.94
63108--63218
20
5.4
20
83
2
96
16
21
23
38
1.92
63145--63198
21
2.6
21
96
0
99
24
16
27
31
1.96
63211--63293
19
4.1
20
73
11
62
21
16
24
37
1.94
63210--63302
22
4.4
22
77
9
95
20
18
24
36
1.95
63422--63473
20
2.6
20
93
6
88
42
25
23
9
1.84
63462--63515
21
2.6
21
96
0
99
29
27
16
25
1.97
63815--63863
3
16.7
3
95
4
91
65
0
0
34
0.93
64098--64127
16
1.9
16
93
6
53
60
6
6
26
1.47

Tables:   1

The End!