genome.fa.s6954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006954.1 Hibiscus syriacus cultivar Beakdansim tig00017878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100097

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250--1307	20	2.6	22	89	10	84	31	20	22	25	1.98
2036--2141	18	5.9	18	84	0	140	20	22	31	25	1.98
2036--2141	36	2.9	36	91	0	167	20	22	31	25	1.98
2397--2424	2	14.0	2	100	0	56	50	0	0	50	1.00
5403--5463	24	2.5	24	89	0	95	36	16	19	27	1.93
5798--5931	54	2.5	54	93	0	232	18	22	30	28	1.97
5798--5931	18	7.4	18	89	0	196	18	22	30	28	1.97
6194--6225	2	16.0	2	100	0	64	50	0	0	50	1.00
10830--10862	15	2.2	15	94	0	57	54	3	0	42	1.15
11961--12007	24	2.0	24	86	0	67	29	4	4	61	1.34
12487--12548	28	2.3	27	78	13	74	29	1	3	66	1.17
13061--13100	16	2.6	16	88	4	55	22	2	5	70	1.19
28465--28528	22	2.9	22	79	13	60	25	35	23	15	1.94
28509--28549	21	1.9	22	85	5	57	34	39	17	9	1.82
35467--35499	16	2.1	16	100	0	66	42	15	6	36	1.71
38425--38486	16	3.9	16	100	0	124	19	25	9	45	1.81
38427--38497	32	2.2	32	90	5	108	21	28	9	40	1.85
42400--42578	60	3.0	59	81	4	198	34	22	3	39	1.73
43194--43248	28	2.0	28	92	0	92	34	18	12	34	1.89
47657--47778	27	4.6	27	94	2	203	28	12	17	41	1.85
55844--55880	2	18.5	2	100	0	74	51	0	0	48	1.00
56254--56324	33	2.2	33	94	5	126	28	11	19	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56374--56437	3	22.7	3	79	17	75	65	0	0	34	0.93
56783--57383	84	7.2	82	79	7	534	25	18	24	30	1.98
56781--57385	168	3.6	162	80	7	644	25	18	24	30	1.98
56785--57376	253	2.4	248	82	4	683	25	18	25	30	1.98
57508--58147	110	5.9	110	91	0	1036	24	18	22	33	1.97
61709--61808	40	2.4	41	77	19	107	66	1	4	29	1.17
61818--61860	15	2.8	15	82	3	50	76	0	4	18	0.95
62238--62296	3	19.3	3	74	22	52	67	0	1	30	1.00
62238--62296	13	5.1	11	72	22	50	67	0	1	30	1.00
62238--62296	24	2.5	25	83	10	88	67	0	1	30	1.00
73643--73713	21	3.2	23	69	23	53	40	11	5	42	1.64
73735--73785	26	2.0	26	92	0	84	41	7	15	35	1.76
73831--74064	53	4.5	51	66	18	124	45	5	7	41	1.54
73956--74065	2	58.0	2	66	22	51	48	5	2	43	1.40
73752--74154	155	2.6	155	69	18	349	42	6	8	42	1.61
74174--74260	2	45.5	2	74	13	67	47	1	5	45	1.34
76538--76624	30	2.9	30	94	0	147	58	1	4	35	1.26
78440--78555	60	1.9	60	82	0	142	50	5	11	33	1.60
80627--80888	103	2.5	103	97	1	490	41	6	13	37	1.72
81057--81091	18	2.0	18	88	5	54	40	0	0	60	0.97
82810--82934	61	2.0	62	80	10	141	45	0	4	49	1.23
82885--82929	23	2.0	23	90	0	72	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82886--82954	23	3.0	23	82	6	68	46	0	2	50	1.16
82834--82952	62	2.0	58	82	9	141	45	0	3	51	1.18
82924--83004	19	4.3	19	72	20	64	48	1	1	49	1.17
83078--83131	8	6.9	8	75	12	58	40	0	1	57	1.09
83069--83131	23	2.7	23	80	11	83	44	0	1	53	1.10
86317--86420	35	2.9	37	88	7	160	36	16	12	34	1.86
87721--87883	64	2.5	64	81	7	170	34	19	20	25	1.96
88429--88506	22	3.5	22	89	0	120	15	25	30	28	1.96
88437--88525	44	2.1	42	87	8	128	19	23	30	26	1.98
92644--92807	64	2.5	65	81	9	167	32	20	21	25	1.97
93356--93411	22	2.5	22	85	0	85	17	21	30	30	1.96
94850--94894	22	2.0	22	82	4	54	46	2	8	42	1.47
95400--95440	21	2.0	20	85	4	55	41	14	24	19	1.89

Tables:   1

The End!