genome.fa.s6955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006955.1 Hibiscus syriacus cultivar Beakdansim tig00017880_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75184

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1934--1994	23	2.8	22	85	5	88	27	14	18	39	1.90
1934--1988	21	2.5	21	88	5	74	27	12	18	41	1.86
2955--3016	2	32.0	2	90	6	101	50	1	0	48	1.10
4560--4657	24	4.1	24	86	5	72	37	20	18	23	1.94
5662--5689	10	2.8	10	100	0	56	21	35	32	10	1.88
7734--7834	35	2.9	35	96	0	184	29	28	32	8	1.88
7915--8002	24	3.7	24	90	0	149	30	21	23	23	1.99
16890--16935	19	2.4	19	96	0	83	17	13	45	23	1.83
21189--21239	20	2.5	20	100	0	102	13	15	11	58	1.63
22372--22434	3	21.0	3	90	6	101	34	0	0	65	0.93
22380--22447	14	4.9	14	87	8	50	35	2	0	61	1.11
23886--23995	30	3.7	30	75	6	73	17	16	11	54	1.71
26213--26269	3	19.0	3	89	7	89	64	0	0	35	0.93
27629--27738	30	3.7	30	75	6	73	17	16	11	54	1.71
29713--29774	32	2.0	32	93	3	108	12	14	11	61	1.57
31870--31907	11	3.4	11	89	7	58	71	10	13	5	1.30
33081--33162	4	21.0	4	82	5	105	48	21	1	28	1.58
33518--33616	36	2.8	36	96	0	180	35	16	11	37	1.84
33739--33972	101	2.3	98	80	10	242	30	19	12	36	1.90
33922--34036	33	3.3	33	83	7	131	33	20	11	34	1.88
33938--34069	69	1.9	67	84	3	174	34	19	11	34	1.88
33941--34069	33	3.8	34	82	6	136	34	19	11	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34322--34418	29	3.5	28	79	12	112	29	8	14	47	1.73
34431--34533	52	1.9	53	92	3	172	32	13	18	35	1.90
34520--34576	27	2.1	27	93	0	96	31	7	15	45	1.73
34564--34690	37	3.6	37	71	16	126	30	11	12	44	1.78
34532--34753	67	3.4	65	86	6	281	29	11	13	45	1.77
34801--35025	120	1.9	119	80	8	269	30	13	12	43	1.81
34923--35047	64	2.0	63	88	1	187	32	13	11	43	1.79
35202--35260	15	3.9	15	95	0	100	30	20	5	44	1.73
35597--35678	28	2.9	28	83	3	94	24	12	13	50	1.76
35736--35939	43	4.7	44	72	10	134	25	29	19	25	1.99
35697--35857	83	1.9	83	85	7	223	24	31	19	24	1.98
35721--36028	130	2.4	130	89	1	465	25	30	18	25	1.98
36226--36303	3	26.0	3	92	5	131	34	0	0	65	0.93
43600--43752	37	4.1	38	90	5	233	40	20	19	18	1.92
43607--43787	37	5.0	36	86	6	190	39	22	18	19	1.92
43790--43888	42	2.4	42	81	3	110	26	23	20	30	1.98
43993--44062	20	3.5	20	67	16	54	21	22	21	34	1.97
43992--44093	42	2.5	41	83	1	123	24	22	22	30	1.99
43790--44552	219	3.5	215	91	2	1215	31	15	20	31	1.94
44425--44526	42	2.5	41	80	1	114	23	22	21	32	1.98
44597--44777	55	3.2	55	85	3	236	32	18	21	27	1.97
44597--44833	113	2.1	110	80	4	269	34	18	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48517--48590	3	23.7	3	82	8	85	64	0	2	32	1.07
51386--51433	19	2.5	19	80	10	53	72	2	8	16	1.18
56730--56754	2	12.5	2	100	0	50	48	0	0	52	1.00
66283--66324	21	2.0	22	90	4	68	30	0	2	66	1.04
66269--66343	27	2.7	26	82	12	71	29	0	2	68	1.04
72172--72272	31	3.3	30	75	8	96	46	8	6	37	1.62
72825--72881	16	3.5	17	72	18	57	29	1	7	61	1.32

Tables:   1

The End!