Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006956.1 Hibiscus syriacus cultivar Beakdansim tig00017890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80852

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--140
31
2.3
31
87
0
108
29
9
25
36
1.88
2051--2079
3
9.7
3
100
0
58
0
0
31
68
0.89
4904--4939
18
2.0
18
100
0
72
22
11
11
55
1.66
10112--10156
18
2.5
18
96
0
81
20
11
0
68
1.19
12583--12709
24
5.3
24
81
4
132
55
14
9
20
1.67
16913--17031
24
5.0
24
78
4
132
52
17
9
21
1.72
16911--17031
48
2.5
48
86
0
161
52
17
9
21
1.72
21327--21412
42
2.0
42
100
0
172
38
13
13
33
1.85
21678--21840
87
1.9
87
94
0
290
41
9
15
33
1.80
23289--23339
6
8.5
6
86
0
57
23
33
5
37
1.79
23289--23339
9
5.7
9
83
0
57
23
33
5
37
1.79
23290--23356
12
5.8
12
82
10
77
20
32
7
38
1.81
23311--23356
6
7.7
6
82
0
56
17
32
8
41
1.80
24868--26207
200
6.7
200
95
0
2365
30
18
14
36
1.91
26429--26489
19
3.3
18
88
2
59
52
11
1
34
1.47
26441--26489
19
2.6
19
96
0
89
55
10
2
32
1.45
26743--26807
21
3.1
21
88
0
94
15
30
10
43
1.81
29030--29076
20
2.4
19
82
10
67
19
17
10
53
1.72
29004--29466
181
2.5
182
90
0
712
26
17
14
42
1.87
29623--29647
11
2.3
11
100
0
50
36
24
8
32
1.84
30543--30579
15
2.5
15
100
0
74
32
21
21
24
1.98
32170--32265
48
2.0
48
97
0
183
32
16
3
47
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32172--32276
48
2.2
48
93
3
176
34
15
2
47
1.60
33022--33059
16
2.4
16
91
4
60
36
13
18
31
1.89
40598--40631
2
17.0
2
100
0
68
50
0
0
50
1.00
41044--41090
2
24.0
2
91
4
78
51
2
0
46
1.13
42087--42175
40
2.3
39
83
11
103
66
0
11
22
1.23
44610--45161
5
113.4
5
90
9
887
59
0
0
40
0.97
46008--46050
22
2.0
22
90
0
68
41
13
13
30
1.84
46391--46834
55
8.0
55
88
1
611
33
12
18
35
1.88
53431--53884
55
8.3
55
87
3
621
35
11
17
35
1.86
53442--53884
165
2.7
165
90
2
685
35
11
17
35
1.87
54543--54824
37
7.6
36
80
8
289
42
11
2
42
1.55
54542--54824
75
3.8
73
82
8
297
43
11
2
42
1.55
55124--55302
81
2.2
81
90
0
277
23
15
24
36
1.93
62356--62435
30
2.7
30
96
1
144
35
7
16
41
1.76
62546--62587
21
2.0
21
95
0
75
23
21
28
26
1.99
67707--67736
15
1.9
16
93
6
53
60
0
3
36
1.14
67679--67759
41
1.9
43
82
9
105
64
1
7
27
1.28
67676--67768
41
2.3
39
78
15
98
66
1
7
24
1.24
67731--67776
21
2.2
21
81
11
51
69
0
13
17
1.19
67816--67875
23
2.5
22
81
10
57
60
1
10
28
1.39
68506--68538
15
2.1
16
88
5
50
24
0
18
57
1.40
69213--69254
21
2.0
21
100
0
84
19
33
19
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71657--71708
25
2.1
24
82
3
59
46
1
5
46
1.38
71865--71934
31
2.3
31
100
0
140
37
11
7
44
1.68
72979--73041
16
3.9
16
79
18
69
58
3
0
38
1.14
80016--80046
15
2.1
15
93
0
53
45
0
0
54
0.99

Tables:   1

The End!