genome.fa.s6957.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006957.1 Hibiscus syriacus cultivar Beakdansim tig00017891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93221

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7303--7347	10	4.3	11	78	18	51	44	2	2	51	1.26
8740--8773	16	2.1	16	89	10	52	14	8	0	76	1.01
8740--8801	14	4.6	14	75	15	60	17	4	3	74	1.13
10869--10919	19	2.7	19	96	0	93	41	11	15	31	1.83
10985--11026	21	2.0	21	95	0	75	26	28	16	28	1.97
16073--16128	20	2.6	20	80	11	58	39	19	14	26	1.90
16815--16864	23	2.1	24	88	7	75	24	16	24	36	1.94
20029--20109	24	3.5	24	85	6	107	35	18	19	25	1.95
23493--23536	22	2.0	22	91	4	72	20	20	29	29	1.98
24133--24177	15	2.8	17	76	13	58	42	0	17	40	1.50
37670--37742	36	2.0	36	89	5	112	49	4	1	45	1.29
40032--40110	38	2.2	35	85	12	108	40	36	10	12	1.77
41043--41074	2	16.0	2	100	0	64	50	0	0	50	1.00
42934--42968	16	2.2	16	94	0	61	14	28	22	34	1.93
45027--45100	29	2.5	30	80	4	87	43	4	18	33	1.69
47902--47950	19	2.7	17	84	9	53	26	20	28	24	1.99
47922--48081	65	2.5	65	86	5	209	25	18	24	31	1.97
47922--48131	65	3.3	63	80	12	205	25	18	24	31	1.97
56638--56670	17	1.9	17	88	11	50	30	18	18	33	1.94
58222--58460	57	4.2	57	90	0	361	34	9	17	38	1.82
58223--58488	114	2.3	112	86	3	298	36	9	15	39	1.79
58652--59174	269	1.9	270	89	1	798	30	13	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58652--59174	68	7.7	68	87	1	721	30	13	24	31	1.94
59129--59440	81	3.8	81	92	1	518	37	12	21	28	1.90
59466--59728	45	5.8	46	87	1	370	48	8	18	24	1.76
59472--59728	136	1.9	136	94	0	451	49	8	18	23	1.76
59466--59730	91	2.9	91	88	1	379	48	8	18	24	1.76
59472--59775	136	2.2	136	88	1	430	46	9	19	24	1.80
59703--59825	45	2.7	45	89	3	194	38	13	26	22	1.90
59472--59818	136	2.6	136	85	2	403	45	10	20	23	1.81
62500--62551	20	2.6	20	96	0	95	38	26	13	21	1.90
62607--62800	20	9.6	20	76	8	76	35	25	19	19	1.95
62603--62800	40	5.0	39	81	4	200	35	26	19	19	1.95
62607--62799	60	3.2	60	83	0	251	35	25	19	19	1.95
63183--63253	33	2.2	33	92	0	115	11	22	18	47	1.80
63374--63428	14	3.6	14	73	21	56	41	23	25	9	1.83
63374--63444	33	2.2	33	94	0	124	43	25	22	8	1.81
63440--63537	19	5.7	19	68	22	72	11	24	21	42	1.85
63462--63551	14	5.7	14	72	23	72	10	25	22	42	1.84
63445--63559	33	3.5	33	92	0	203	10	24	20	45	1.82
65253--65722	92	5.1	93	97	1	894	22	12	18	46	1.83
65766--65894	19	7.3	19	75	17	125	45	28	17	8	1.77
65802--65894	33	2.8	32	91	4	150	46	27	18	7	1.76
65766--65894	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65895--65949	14	3.6	14	76	21	56	10	20	21	47	1.80
65890--65968	33	2.4	33	95	0	140	11	21	21	45	1.83
65901--65989	19	5.1	17	77	18	78	8	19	22	49	1.76
65940--66005	19	3.4	19	87	6	89	10	16	27	45	1.80
67904--67939	14	2.6	14	95	0	63	33	0	22	44	1.53
68046--68147	19	5.6	19	84	13	151	44	17	23	14	1.86
68176--68468	19	16.4	19	83	14	392	14	20	18	47	1.83
68154--68468	52	5.9	52	87	9	330	14	20	18	46	1.83
68176--68440	128	2.1	122	84	12	194	14	21	16	47	1.83
70948--70994	24	2.0	24	87	8	69	38	21	14	25	1.92
71677--72045	20	18.5	20	86	5	451	20	18	26	34	1.96
89773--90291	193	2.7	191	84	4	620	40	12	15	31	1.85

Tables:   1

The End!