genome.fa.s696.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000696.1 Hibiscus syriacus cultivar Beakdansim tig00001356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77291

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395--438	13	3.1	14	80	9	54	84	0	13	2	0.73
395--431	13	2.8	13	91	4	56	83	0	13	2	0.74
794--864	17	4.1	18	77	12	78	32	12	5	49	1.64
2182--2607	110	3.8	110	81	9	452	38	12	19	28	1.89
2548--2592	23	2.0	22	83	12	56	46	6	28	17	1.73
2959--3015	5	11.2	5	76	10	53	33	1	1	63	1.15
7692--7755	24	2.7	24	97	0	119	26	23	25	25	2.00
7774--7810	17	2.2	17	95	0	65	24	32	18	24	1.97
7740--7789	11	4.5	11	80	5	55	26	24	20	30	1.98
8018--8090	37	2.0	36	89	2	110	54	10	8	26	1.63
8181--8241	33	1.9	31	87	9	88	42	16	14	26	1.87
10523--10576	7	7.7	7	80	0	54	22	0	35	42	1.54
10523--10576	21	2.6	21	79	5	65	22	0	35	42	1.54
11686--11766	43	1.9	43	82	5	103	45	4	2	46	1.37
23860--24087	54	4.2	54	87	3	325	34	18	18	28	1.95
25204--25298	30	3.2	30	95	0	172	32	24	0	43	1.55
25204--25312	30	3.6	30	90	2	112	33	23	0	41	1.61
25204--25316	60	1.9	59	85	5	156	33	23	0	42	1.60
30891--30975	40	2.1	40	93	0	143	20	24	24	30	1.98
30891--30976	20	4.3	20	89	0	127	19	24	24	31	1.98
30907--30985	40	2.0	40	89	0	122	22	24	22	30	1.99
34625--34659	11	3.2	11	95	0	61	22	48	20	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35322--35359	20	1.9	20	88	0	58	26	26	21	26	1.99
37276--37787	54	9.5	54	88	0	722	33	20	18	28	1.96
37293--37791	214	2.3	215	89	0	739	33	20	18	27	1.96
38116--38184	22	3.4	21	84	9	90	33	20	14	31	1.92
40014--40511	254	2.1	238	82	11	581	27	11	20	40	1.87
40281--40344	28	2.3	28	91	2	112	12	6	35	45	1.67
41948--42067	50	2.4	49	80	2	132	16	33	26	23	1.96
42188--42228	20	2.1	19	86	4	55	29	26	0	43	1.55
42371--42703	111	3.0	111	98	0	630	35	8	11	44	1.70
44605--44648	9	4.9	9	85	0	52	31	22	36	9	1.86
44593--44639	18	2.6	18	86	0	67	29	21	36	12	1.91
44865--44949	35	2.5	33	78	14	91	25	8	10	55	1.62
50348--50433	35	2.5	35	84	0	100	40	20	1	37	1.61
50402--50444	21	2.0	21	100	0	86	46	13	0	39	1.44
50566--50599	16	2.0	18	88	11	54	26	2	5	64	1.30
51069--51316	130	1.9	130	92	0	415	37	12	14	35	1.84
51893--51962	29	2.3	29	83	9	79	25	8	34	31	1.86
51918--51973	29	1.9	29	85	7	78	28	8	30	32	1.88
60683--60725	21	2.2	19	84	16	52	46	4	0	48	1.22
62273--62301	3	9.7	3	100	0	58	34	0	0	65	0.93
63966--64076	29	3.8	28	77	5	105	19	11	8	60	1.56
67989--68021	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69901--69982	30	2.8	29	83	3	92	29	14	13	42	1.84
69924--69998	30	2.5	30	84	6	89	26	14	14	44	1.84
70094--70603	130	3.9	128	79	5	504	26	31	17	24	1.97
70163--70641	263	1.8	263	81	3	606	26	31	17	25	1.97
71209--71279	35	2.0	35	97	0	133	12	39	21	26	1.89
72516--72613	29	3.3	29	78	5	90	18	13	8	60	1.57

Tables:   1

The End!