Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006960.1 Hibiscus syriacus cultivar Beakdansim tig00017906_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84572

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810--879
22
3.2
22
75
16
58
45
0
2
51
1.16
839--939
34
2.9
34
75
12
80
47
0
0
51
1.07
1056--1110
22
2.5
22
88
8
76
52
0
1
45
1.11
1056--1139
29
2.9
27
79
19
89
52
0
1
46
1.08
1417--3948
629
4.0
636
92
5
4048
39
12
9
38
1.77
3929--3986
27
2.1
27
84
6
73
31
13
1
53
1.50
3963--4015
26
2.1
26
85
3
72
32
5
0
62
1.19
4042--4146
31
3.7
27
75
15
79
35
7
2
54
1.44
7543--7569
11
2.5
11
100
0
54
33
0
14
51
1.43
7141--12085
260
19.2
261
79
7
4715
37
15
18
28
1.92
7550--12085
518
8.8
522
81
7
4611
37
15
19
28
1.92
15102--15151
25
2.0
25
84
7
66
74
2
0
24
0.93
15718--15753
17
2.2
16
90
5
54
41
0
0
58
0.98
21978--22006
12
2.3
13
94
5
51
68
0
0
31
0.89
23439--23504
3
21.0
3
82
14
64
63
0
3
33
1.10
23439--23504
14
4.6
14
79
20
75
63
0
3
33
1.10
23439--23504
30
2.3
28
87
7
89
63
0
3
33
1.10
23444--23501
19
2.9
20
82
10
66
63
0
3
32
1.11
27238--27276
19
2.1
19
95
0
69
35
20
15
28
1.93
29821--29848
11
2.5
11
100
0
56
28
25
39
7
1.82
30828--30860
15
2.1
16
88
5
50
36
0
0
63
0.95
32092--32132
14
2.9
14
100
0
82
21
36
34
7
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32085--32136
14
3.7
14
92
0
77
23
38
30
7
1.83
32092--32145
28
1.9
28
88
0
81
24
35
31
9
1.87
32192--32384
29
6.7
29
98
0
359
23
27
34
13
1.93
35463--35494
3
10.7
3
100
0
64
31
0
0
68
0.90
37753--37791
21
1.9
20
84
5
51
43
5
0
51
1.24
45641--45686
2
23.0
2
93
0
74
52
2
0
45
1.13
46289--46367
31
2.5
31
79
0
95
37
12
13
35
1.83
78974--79040
35
1.9
35
87
0
98
47
8
8
34
1.66
83240--83846
212
2.8
209
79
13
559
31
12
15
40
1.85
84211--84268
21
2.8
21
94
0
107
20
39
18
20
1.92

Tables:   1

The End!