genome.fa.s6961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006961.1 Hibiscus syriacus cultivar Beakdansim tig00017907_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73199

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818--847	14	2.1	14	100	0	60	40	13	13	33	1.83
1851--1927	3	25.0	3	79	7	75	58	0	0	41	0.98
7039--7337	82	3.6	82	89	3	438	37	10	14	38	1.80
9435--9486	24	2.2	24	89	0	77	9	26	0	63	1.25
19879--19930	17	3.0	17	73	13	52	30	0	1	67	1.02
20055--20080	2	13.0	2	100	0	52	50	0	0	50	1.00
25863--25887	12	2.1	12	100	0	50	16	16	8	60	1.58
27950--27985	2	18.0	2	94	0	63	50	2	0	47	1.15
32770--32817	23	2.1	23	84	0	60	37	12	16	33	1.86
33200--33251	23	2.3	22	90	6	77	44	19	1	34	1.62
33210--33272	23	2.7	23	90	0	90	38	19	6	36	1.77
33595--33681	39	2.2	39	95	0	156	17	13	20	48	1.81
33939--33975	18	2.1	18	89	0	56	51	10	5	32	1.60
34224--34274	25	2.0	25	92	0	84	39	19	7	33	1.81
34543--34594	23	2.3	22	90	6	77	44	19	1	34	1.62
34553--34615	23	2.7	23	90	0	90	38	19	6	36	1.77
34984--35046	23	2.7	23	85	0	81	36	19	6	38	1.77
34309--35573	431	2.9	431	97	0	2401	39	12	8	39	1.73
35403--35454	23	2.3	22	90	6	77	44	19	1	34	1.62
35413--35475	23	2.7	23	90	0	90	38	19	6	36	1.77
38049--38574	184	2.9	183	95	0	926	33	16	14	35	1.89
40039--40122	3	28.0	3	79	0	87	25	34	4	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40039--40137	12	8.0	12	81	6	81	23	34	6	36	1.79
40052--40134	42	2.0	42	95	0	148	22	34	7	34	1.82
40070--40137	21	3.4	18	69	21	55	19	35	8	36	1.83
41590--43083	199	7.5	199	98	0	2861	32	16	15	36	1.90
43231--43278	18	2.6	18	90	3	69	56	10	2	31	1.45
45064--45129	33	2.0	33	87	0	96	24	45	1	28	1.62
47430--47472	20	2.3	18	85	14	61	20	16	11	51	1.75
47435--47481	20	2.4	19	82	10	67	19	17	10	53	1.72
47602--47647	20	2.3	20	89	10	76	17	17	10	54	1.70
47713--48387	229	3.0	229	97	0	1250	39	7	8	44	1.62
58407--58579	95	1.8	95	93	0	301	47	19	16	17	1.83
61948--61985	20	1.9	19	85	15	51	55	5	0	39	1.23
61962--61994	16	2.1	16	94	0	57	51	3	0	45	1.16
64549--64645	36	2.7	35	82	7	99	30	16	12	40	1.85
64570--64645	35	2.1	36	83	7	93	35	18	10	35	1.85
64802--64867	28	2.4	28	89	0	96	24	15	18	42	1.88
64924--65363	135	3.3	132	85	4	580	27	30	17	24	1.97
65565--65617	3	17.0	3	88	7	79	33	1	0	64	1.05
68556--68603	14	3.7	14	73	21	59	58	0	2	39	1.10
68621--68679	24	2.5	24	82	15	70	55	0	5	38	1.22
68828--68875	2	24.0	2	91	8	80	50	2	0	47	1.12
69486--69529	19	2.4	18	80	3	52	40	4	0	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69480--69529	18	2.7	19	79	17	52	42	4	2	52	1.31

Tables:   1

The End!