genome.fa.s6963.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006963.1 Hibiscus syriacus cultivar Beakdansim tig00017920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174981

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915--1134	21	10.8	21	68	7	139	18	20	24	36	1.95
937--1131	20	9.6	20	71	7	151	16	21	24	37	1.94
912--1134	41	5.5	41	92	2	360	18	20	23	36	1.95
1700--1800	20	4.9	20	66	8	60	38	26	17	16	1.92
1707--1809	41	2.5	41	87	0	143	40	26	17	15	1.89
10621--10676	23	2.4	23	81	0	76	37	23	21	17	1.94
15313--15387	31	2.4	31	90	0	114	42	10	14	32	1.80
16263--16330	21	3.3	21	76	15	88	25	16	26	32	1.96
16266--16357	40	2.3	40	98	0	175	27	15	25	32	1.95
16287--16353	19	3.4	19	73	15	73	26	16	23	32	1.96
16263--16343	21	4.0	21	75	15	80	28	16	24	30	1.96
16405--16440	6	6.0	6	100	0	72	33	50	16	0	1.46
16716--16808	20	4.6	20	79	2	114	40	21	22	15	1.90
16680--16788	41	2.7	41	94	0	191	38	22	22	17	1.93
16716--16833	61	1.9	61	96	0	218	38	22	21	17	1.93
17920--17965	14	3.3	13	85	11	56	8	34	34	21	1.84
33834--34030	20	9.8	20	70	10	89	38	24	17	19	1.93
33979--34207	20	11.4	20	86	0	233	37	24	17	20	1.94
34900--34946	24	2.0	24	87	8	69	25	14	21	38	1.92
37428--37599	33	5.0	33	74	14	159	46	18	22	12	1.82
37442--37599	19	9.0	19	74	21	166	46	17	22	13	1.82
37442--37599	53	3.0	53	96	0	282	46	17	22	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37428--37599	86	2.0	84	84	13	226	46	18	22	12	1.82
37599--37687	19	4.9	19	82	14	125	14	21	15	48	1.81
37778--37814	14	2.6	14	91	0	65	45	21	0	32	1.52
39795--39851	14	3.7	14	75	20	51	43	22	22	10	1.84
39776--39868	33	2.8	33	95	0	168	46	21	21	10	1.81
39739--39873	19	7.6	19	75	16	119	45	23	20	11	1.83
39739--39873	52	2.6	51	73	13	130	45	23	20	11	1.83
39885--39943	14	3.9	14	74	20	55	6	15	28	49	1.70
39869--39992	33	3.7	33	89	1	176	8	16	27	46	1.77
39869--39927	19	3.4	19	77	22	83	6	15	30	47	1.71
39869--39960	19	5.4	18	67	24	56	7	16	28	47	1.73
40040--40312	93	3.1	87	90	6	324	45	19	13	22	1.85
40090--40312	93	2.4	93	98	0	428	45	18	13	22	1.84
41999--42081	20	4.2	20	81	6	114	46	16	24	12	1.81
41997--42080	41	2.1	41	88	2	125	47	16	25	10	1.79
42098--42161	33	2.1	31	85	11	87	10	21	20	46	1.81
42142--42215	21	3.5	21	80	7	96	14	20	17	47	1.83
42298--42366	32	2.2	32	94	0	120	46	18	23	11	1.82
42317--42366	16	3.0	18	69	22	54	44	20	24	12	1.85
42744--42878	20	6.7	20	86	5	200	20	19	27	32	1.97
42744--42916	60	2.9	60	83	4	224	19	19	26	35	1.95
44514--44646	59	2.2	60	82	6	153	34	15	16	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61458--61493	2	18.0	2	100	0	72	50	0	0	50	1.00
61772--62158	158	2.5	156	82	4	429	45	7	17	29	1.75
62260--62296	14	2.6	14	91	0	56	37	21	16	24	1.93
63716--63747	14	2.4	13	90	10	55	90	0	0	9	0.45
64978--65016	18	2.2	18	86	9	53	61	0	15	23	1.33
65092--65282	35	5.5	34	69	19	99	43	7	4	43	1.53
65116--65180	31	2.1	30	88	8	96	44	6	6	43	1.54
65247--65324	39	1.9	42	82	12	101	38	3	7	50	1.50
66087--67071	106	9.3	106	94	0	1625	23	18	24	33	1.97
68959--69015	26	2.2	25	79	11	62	57	8	17	15	1.63
72183--72221	18	2.2	18	86	9	53	61	0	15	23	1.33
72270--72392	33	3.8	31	72	19	90	45	7	4	43	1.50
72687--72775	2	44.5	2	100	0	178	49	0	0	50	1.00
82164--82208	23	2.0	23	86	8	65	35	33	8	22	1.85
82287--82326	17	2.4	17	100	0	80	22	22	22	32	1.98
82279--82332	17	2.6	23	67	32	66	20	22	22	35	1.96
82433--82464	13	2.5	13	95	5	57	37	0	15	46	1.46
82685--82729	23	1.9	24	90	4	74	33	35	15	15	1.89
83647--83707	26	2.3	26	85	0	77	52	18	4	24	1.65
85269--85318	25	2.0	25	100	0	100	44	20	0	36	1.52
91942--91972	16	1.9	16	93	0	53	54	9	9	25	1.63
93997--94032	19	1.9	19	94	5	65	55	5	2	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96241--96276	2	18.0	2	100	0	72	50	0	0	50	1.00
99008--99045	18	2.1	18	95	0	67	26	7	39	26	1.83
101460--101493	11	3.1	11	100	0	68	73	0	0	26	0.83
103006--103037	16	2.0	16	100	0	64	43	12	12	31	1.80
103420--103473	24	2.2	24	83	6	74	9	11	18	61	1.55
105356--105382	4	6.8	4	100	0	54	74	0	0	25	0.83
125814--125843	15	2.1	14	93	6	51	43	10	20	26	1.83
130445--130474	6	5.0	6	100	0	60	33	0	66	0	0.92
143743--143823	35	2.5	31	73	21	74	44	0	3	51	1.19
144323--144500	59	3.0	56	79	11	187	32	20	6	40	1.77
145659--145714	27	2.0	28	86	3	78	32	12	16	39	1.85
145662--145726	27	2.6	24	77	13	76	38	13	16	30	1.88
146195--146250	15	3.6	15	79	9	67	42	12	12	32	1.80
146198--146248	17	3.1	17	77	11	61	43	11	9	35	1.75
146463--146517	13	4.2	13	75	13	58	49	10	3	36	1.56
146503--146601	33	3.0	33	94	1	164	45	15	7	32	1.73
146596--146635	21	1.9	21	94	0	71	47	7	15	30	1.72
149028--149066	19	2.0	20	90	5	62	43	20	15	20	1.88
152542--152664	51	2.4	51	78	6	124	44	7	7	40	1.60
159194--159228	15	2.3	15	100	0	70	40	20	40	0	1.52
159910--159937	2	14.0	2	100	0	56	50	0	0	50	1.00
160320--160379	30	2.0	30	100	0	120	30	20	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165437--166757	587	2.3	587	91	4	2161	40	8	9	42	1.67
165437--166757	294	4.6	294	91	4	2088	40	8	9	42	1.67
169383--169424	17	2.3	18	84	12	59	61	0	0	38	0.96

Tables:   1

The End!