Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006966.1 Hibiscus syriacus cultivar Beakdansim tig00017927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74290

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3976--4000
11
2.3
11
100
0
50
16
0
8
76
1.02
4127--4171
16
2.7
17
82
3
56
73
0
2
24
0.95
7738--7792
28
2.0
28
88
0
83
36
16
14
32
1.89
8084--8212
66
2.0
66
82
3
161
46
7
9
36
1.65
12555--12606
22
2.4
22
100
0
104
36
28
17
17
1.92
17058--17130
23
3.2
23
96
0
128
41
21
2
34
1.68
17549--17621
23
3.2
23
94
0
119
41
21
2
34
1.68
16656--18232
491
3.2
488
96
1
2908
40
11
7
41
1.69
18036--18108
23
3.2
23
92
0
110
39
20
4
35
1.72
18622--20385
200
8.8
200
96
0
3179
31
18
14
35
1.91
20607--20667
19
3.3
18
88
2
59
52
11
1
34
1.47
20619--20667
19
2.6
19
96
0
89
55
10
2
32
1.45
22458--22523
33
2.0
33
90
0
105
22
48
0
28
1.51
22557--22621
21
3.1
21
90
0
103
18
29
10
41
1.84
24851--24897
20
2.4
19
79
10
58
19
14
10
55
1.68
24874--25210
161
2.1
161
89
1
514
27
17
14
40
1.88
24874--25266
161
2.4
158
82
6
353
26
16
14
41
1.87
35965--36009
2
22.5
2
100
0
90
51
0
0
48
1.00
36519--36545
5
5.4
5
100
0
54
81
0
18
0
0.69
38864--38949
39
2.3
39
91
4
140
45
5
3
45
1.44
38864--38937
37
2.0
36
89
5
112
45
5
2
45
1.40
38936--38962
13
2.1
13
100
0
54
40
7
7
44
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38929--39117
36
5.3
34
77
11
175
40
11
4
43
1.61
38888--39117
35
6.2
36
76
14
163
40
10
4
44
1.58
38835--39003
89
1.9
87
82
8
209
42
7
3
46
1.48
38927--39111
35
5.1
35
76
14
164
40
10
4
43
1.61
38927--39117
72
2.6
71
83
8
228
40
10
4
43
1.61
42759--42829
31
2.3
30
80
17
76
66
1
1
30
1.09
42790--42829
21
1.9
21
84
0
53
65
0
2
32
1.06
42838--42879
22
1.9
22
90
0
66
47
7
2
42
1.43
42848--43112
38
7.2
37
76
16
198
40
11
4
42
1.63
43247--43298
13
4.0
13
89
0
77
25
21
19
34
1.96
45726--45850
2
62.5
2
100
0
250
50
49
0
0
1.00
45850--45897
2
24.0
2
100
0
96
50
0
0
50
1.00
47104--47151
20
2.4
20
79
6
62
66
2
8
22
1.29
49679--49705
14
1.9
14
100
0
54
22
14
22
40
1.90
53683--53767
23
4.2
19
83
8
64
17
29
30
22
1.97
53706--53767
23
2.7
23
92
2
99
19
25
32
22
1.97
59939--59976
19
2.0
19
85
10
51
0
21
2
76
0.91
66409--66448
21
1.9
21
84
0
53
22
30
2
45
1.66
66995--67025
7
4.3
7
95
4
53
58
12
12
16
1.64
69171--69223
18
2.9
18
91
0
88
28
32
20
18
1.97
69876--69919
20
2.3
20
92
7
74
25
34
13
27
1.93
72842--72901
26
2.3
26
80
5
68
75
5
6
13
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72997--73117
3
38.3
3
69
19
61
60
2
4
33
1.29
73018--73117
16
6.7
15
70
13
64
59
2
3
36
1.24
73034--73116
13
6.1
14
71
13
66
60
1
3
34
1.22
73072--73120
20
2.5
19
86
6
71
65
2
4
28
1.22
72997--73117
10
12.8
9
69
20
61
60
2
4
33
1.29

Tables:   1

The End!