genome.fa.s6967.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006967.1 Hibiscus syriacus cultivar Beakdansim tig00017934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107800

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3683--3742	27	2.1	27	81	6	66	36	11	25	26	1.90
6286--6345	30	2.0	30	96	0	111	41	10	31	16	1.81
13665--13737	31	2.4	31	80	0	83	35	30	15	19	1.92
31882--31989	36	3.0	36	90	5	166	35	5	12	47	1.64
32383--32543	65	2.5	63	82	5	180	30	24	18	27	1.97
38040--38077	20	1.9	20	88	0	58	21	26	10	42	1.85
38898--38977	24	3.5	24	69	22	73	22	22	23	31	1.99
38898--38997	44	2.3	43	84	6	121	24	22	25	29	1.99
40472--40683	65	3.3	65	76	11	202	30	23	18	27	1.98
42530--42558	15	2.0	15	93	6	51	24	6	13	55	1.63
44418--44475	24	2.4	25	88	2	82	44	1	3	50	1.29
50544--50773	20	11.5	20	86	1	246	37	25	17	19	1.94
51435--51489	24	2.3	24	83	0	65	27	14	20	38	1.91
51677--51701	12	2.1	12	100	0	50	72	0	28	0	0.86
53947--54097	19	8.4	19	81	16	196	13	23	17	45	1.84
53928--54097	53	3.2	53	99	0	333	13	24	17	44	1.85
53928--54079	33	4.4	34	74	19	145	13	24	17	44	1.84
54155--54317	33	4.7	33	74	17	161	44	17	23	13	1.85
54155--54322	53	3.2	53	97	1	320	43	17	24	14	1.86
54294--54409	53	2.2	52	83	3	142	19	24	18	37	1.93
54330--54429	19	5.5	19	84	12	147	15	23	17	45	1.85
54313--54429	53	2.2	53	95	1	209	14	24	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56538--56594	14	3.7	14	77	20	60	45	22	21	10	1.82
56519--56611	33	2.8	33	95	0	168	47	21	20	10	1.80
56482--56616	19	7.6	19	76	16	128	45	23	19	11	1.82
56612--56740	19	7.3	19	75	17	125	8	17	28	45	1.77
56612--56703	33	2.8	33	93	3	150	7	18	28	45	1.76
56783--57255	93	5.1	93	97	0	894	46	18	12	22	1.83
56783--57255	185	2.5	186	97	0	894	46	18	12	22	1.83
58960--59049	14	5.7	14	74	23	81	43	23	24	8	1.82
58959--59065	14	6.5	18	70	29	80	44	22	23	9	1.81
58952--59065	33	3.5	33	91	5	196	45	21	23	9	1.81
59082--59138	14	3.7	14	75	20	60	8	24	22	43	1.81
59066--59146	33	2.5	33	95	0	144	8	22	22	46	1.78
59123--59198	21	3.7	21	83	3	109	11	25	17	46	1.82
59122--59199	41	1.9	41	97	0	147	12	25	16	44	1.83
59278--59348	33	2.2	33	89	0	106	47	16	23	11	1.79
59528--59582	22	2.5	22	81	0	74	20	16	40	23	1.91
59728--59921	20	9.6	20	81	5	212	19	19	25	35	1.95
59728--59921	60	3.2	60	81	0	235	19	19	25	35	1.95
59908--59990	21	4.0	21	73	6	78	25	16	24	33	1.96
59888--59986	42	2.4	43	77	11	100	21	18	23	37	1.94
60846--60940	46	2.1	45	92	2	154	31	18	10	38	1.85
62189--62232	21	2.1	21	91	0	70	11	70	6	11	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62198--62239	21	2.0	21	85	0	57	16	66	9	7	1.42
63392--63434	21	2.0	21	86	8	61	48	0	6	44	1.29
69592--69629	16	2.4	16	83	12	51	34	0	2	63	1.09
85834--86123	20	14.2	20	76	13	254	39	25	18	16	1.91
85917--86115	62	3.2	61	89	5	280	37	26	19	17	1.93
85834--86123	42	7.1	39	82	8	280	39	25	18	16	1.91
86216--86296	6	14.0	6	98	1	141	30	51	17	0	1.45
86829--87581	20	37.0	20	83	10	906	16	19	25	38	1.92
88632--88897	128	2.1	128	82	2	311	29	13	18	38	1.89
91540--91571	2	16.0	2	100	0	64	0	50	0	50	1.00
93323--93350	2	14.0	2	100	0	56	50	0	0	50	1.00
97432--97464	2	16.5	2	100	0	66	51	0	0	48	1.00
97679--97723	21	2.2	20	84	4	54	73	6	8	11	1.25
98315--98355	2	20.5	2	100	0	82	48	0	0	51	1.00
98523--98591	2	34.5	2	100	0	138	50	0	0	49	1.00
100469--100510	2	21.0	2	100	0	84	50	0	0	50	1.00
103149--103205	21	2.8	21	94	2	98	28	24	17	29	1.97
104938--105014	32	2.4	32	95	4	138	9	59	5	25	1.49
106433--106495	32	2.0	32	84	6	83	30	30	6	33	1.82
107597--107649	13	4.2	13	76	11	56	35	5	1	56	1.34

Tables:   1

The End!