Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006968.1 Hibiscus syriacus cultivar Beakdansim tig00017942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68578

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2194--2250
29
2.0
29
93
3
98
54
14
7
24
1.64
6406--6457
26
2.0
26
100
0
104
50
23
3
23
1.66
7983--8056
24
3.0
25
70
24
66
48
1
0
50
1.09
8042--8080
13
2.9
13
81
7
51
38
0
0
61
0.96
8220--8300
27
3.0
27
74
16
78
50
1
1
46
1.17
9881--9927
14
3.4
14
90
0
67
21
36
34
8
1.84
10594--10658
29
2.2
29
100
0
130
44
21
6
27
1.76
18084--18788
348
2.0
348
98
0
1367
16
22
15
44
1.86
28754--28804
22
2.3
22
93
0
84
31
25
25
17
1.97
28762--28806
22
2.0
22
100
0
90
26
26
26
20
1.99
29026--29085
30
2.0
31
90
3
95
33
23
6
36
1.81
29100--29171
29
2.5
29
93
0
117
38
12
9
38
1.76
29474--29625
68
2.3
67
88
1
214
18
26
27
26
1.98
29605--29647
21
2.0
21
86
0
59
16
25
27
30
1.97
29475--29647
68
2.6
67
84
6
206
18
27
26
27
1.98
35674--35740
22
3.0
22
100
0
134
26
26
26
19
1.99
35960--36019
30
2.0
31
90
3
95
33
23
6
36
1.81
36034--36105
29
2.5
29
93
0
117
38
12
9
38
1.76
36408--36559
68
2.3
67
88
1
214
18
26
27
26
1.98
36539--36581
21
2.0
21
86
0
59
16
25
27
30
1.97
36409--36581
68
2.6
67
84
6
206
18
27
26
27
1.98
37573--37795
105
2.1
105
82
2
261
38
22
15
23
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40013--40067
12
4.6
12
88
0
83
10
16
49
23
1.77
40065--40164
2
52.5
2
70
9
57
48
0
0
52
1.00
40065--40152
33
2.6
33
81
1
113
46
0
0
53
1.00
41989--42037
20
2.6
19
81
15
57
81
4
10
4
0.95
41988--42037
19
2.5
20
78
18
59
80
4
12
4
1.00
45532--45655
51
2.4
50
83
2
167
15
29
29
26
1.96
47528--47595
21
3.2
21
64
12
57
29
22
8
39
1.84
47528--48399
44
20.0
43
91
4
1360
30
21
6
41
1.79
47528--48399
131
6.7
130
92
2
1430
30
21
6
41
1.79
47530--48399
175
5.0
173
93
2
1403
30
21
6
41
1.79
48225--48293
21
3.2
21
64
11
59
28
21
8
40
1.83
48434--49306
176
5.0
176
96
0
1534
31
20
10
37
1.87
49634--49707
19
3.8
19
91
7
114
25
24
20
29
1.99
55216--55256
18
2.3
18
91
4
66
63
2
4
29
1.28
55297--55326
10
3.0
10
95
0
51
36
0
30
33
1.58
55448--55571
49
2.5
48
80
9
124
21
27
35
15
1.94
55583--55645
29
2.1
29
82
8
74
33
12
23
30
1.92
55893--55917
2
12.5
2
100
0
50
48
0
0
52
1.00
56448--56793
2
178.5
2
72
22
242
41
0
6
52
1.31
56411--56809
43
9.8
40
75
18
251
40
0
6
52
1.31
56407--56788
45
8.4
45
75
16
312
40
0
6
52
1.32
56407--56783
112
3.3
112
79
14
355
40
0
5
52
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56407--56783
17
23.8
16
71
19
103
40
0
5
52
1.31
57016--57180
2
88.5
2
70
25
96
41
0
4
53
1.22
57015--57178
5
33.2
5
70
21
91
40
0
4
54
1.22
57023--57181
11
14.8
10
74
20
94
40
0
4
54
1.20
57015--57178
28
5.6
29
75
14
117
40
0
4
54
1.22
57022--57181
23
6.8
23
74
20
102
41
0
4
54
1.20
58286--58407
5
24.6
5
70
21
80
53
6
0
40
1.27
58286--58410
7
17.6
7
74
21
109
53
6
0
40
1.26
64076--64108
2
16.5
2
100
0
66
0
48
0
51
1.00
64360--64416
29
2.0
29
83
10
73
45
0
3
50
1.18
67734--68509
195
3.8
204
83
10
963
50
7
12
29
1.67

Tables:   1

The End!