Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01000697.1 Hibiscus syriacus cultivar Beakdansim tig00001357_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 172836
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


File 2 of 2

Found at i:172642 original size:9 final size:9

Alignment explanation


    Indices: 172574--172643  Score: 50
    Period size: 10  Copynumber: 7.3  Consensus size: 9

     172564 CCGGTTTTCA

                      
     172574 ACCGGTTCTG
          1 ACCGG-TCTG

                  *  *
     172584 ACCGGTTTCA
          1 ACCGGTCT-G

                  *  
     172594 ACCGGTTTG
          1 ACCGGTCTG

                   *  
     172603 AACCGGTTTG
          1 -ACCGGTCTG

                     
     172613 ACCGGTCTG
          1 ACCGGTCTG

                   *  
     172622 AACCGGTTTG
          1 -ACCGGTCTG

                *    
     172632 ACCGATCTG
          1 ACCGGTCTG

               
     172641 ACC
          1 ACC

     172644 CGACCCGACC


Statistics
Matches: 50,  Mismatches: 7, Indels: 7
        0.78            0.11        0.11

Matches are distributed among these distances:
   9   20  0.40
  10   30  0.60

ACGTcount: A:0.17, C:0.29, G:0.27, T:0.27


Consensus pattern (9 bp):   
ACCGGTCTG

Done.