genome.fa.s6970.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006970.1 Hibiscus syriacus cultivar Beakdansim tig00017948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51511

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3935--3976	18	2.3	19	80	12	52	40	7	7	45	1.59
5802--5896	30	3.2	29	89	5	136	34	2	33	29	1.70
6092--6348	89	2.8	90	86	2	354	24	21	15	38	1.92
6865--7267	39	11.5	36	76	13	276	37	14	19	28	1.91
6867--6990	66	1.9	65	83	5	160	37	13	21	27	1.91
6869--7124	102	2.6	98	83	6	311	37	14	20	28	1.91
7035--7241	69	2.9	68	83	7	216	38	15	19	26	1.92
6932--7161	36	6.8	33	75	12	191	39	13	19	27	1.90
7035--7329	39	8.0	39	86	5	298	37	16	17	28	1.92
7331--7474	76	1.9	77	84	11	199	39	14	15	29	1.88
7448--7529	39	2.1	39	86	4	112	35	19	17	28	1.94
11542--11597	29	1.9	29	85	7	78	53	10	17	17	1.72
14211--14294	30	2.8	30	88	0	123	34	2	34	28	1.70
14507--14769	91	2.9	91	86	0	337	24	21	14	40	1.90
15277--15400	65	1.9	66	86	5	180	37	15	21	25	1.93
15342--15702	36	10.0	36	81	7	324	39	14	20	25	1.90
15279--15529	101	2.5	101	86	2	335	38	13	21	25	1.91
15440--16007	39	15.0	39	79	6	357	37	15	18	28	1.91
19555--19584	15	1.9	16	93	6	53	46	10	16	26	1.78
20031--20088	29	1.9	29	86	6	80	55	6	17	20	1.65
20857--20893	18	2.1	18	94	0	65	45	8	0	45	1.32
22732--22814	29	2.8	29	92	3	130	36	2	30	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23013--23271	91	2.8	91	88	1	367	24	22	15	37	1.93
23767--24281	36	14.6	36	77	10	320	39	14	19	27	1.90
23792--23916	66	1.9	66	86	3	180	37	14	20	27	1.92
23924--24002	29	2.8	29	90	1	133	41	8	18	30	1.81
23826--24072	130	1.9	131	88	2	372	38	11	21	27	1.88
23981--24366	39	10.3	39	86	3	275	38	15	17	29	1.90
24369--24514	76	1.9	77	87	5	215	40	14	14	30	1.86
24488--24569	39	2.1	39	86	4	112	35	21	17	25	1.95
24516--24629	60	1.9	60	85	3	158	35	17	16	30	1.92
28464--28520	28	1.9	31	86	10	84	56	8	15	19	1.65
29290--29333	18	2.4	18	81	7	54	40	6	6	45	1.57
31163--31257	30	3.2	29	91	5	145	33	3	33	29	1.73
39006--39086	23	3.7	21	78	15	76	25	29	24	19	1.99
39008--39073	23	2.9	22	82	6	78	22	31	24	21	1.98
44592--44646	22	2.5	22	77	11	60	34	0	3	61	1.13
44704--44732	13	2.1	14	93	6	51	51	10	6	31	1.62
49705--49837	20	6.7	20	87	0	185	37	18	20	24	1.94
49824--49889	20	3.3	20	87	2	98	31	28	18	21	1.96

Tables:   1

The End!