Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006972.1 Hibiscus syriacus cultivar Beakdansim tig00017957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78377

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12511--12597
24
3.4
25
84
12
115
31
17
16
35
1.92
12556--12653
40
2.4
40
86
8
128
35
14
13
36
1.85
12556--12653
41
2.4
40
85
11
121
35
14
13
36
1.85
12580--12615
16
2.2
17
95
5
65
41
11
11
36
1.76
12580--12653
17
3.9
18
71
21
55
36
13
12
37
1.82
14482--14536
20
2.7
21
83
8
69
30
29
16
23
1.96
18182--18263
20
4.1
20
75
0
74
46
20
10
21
1.81
19635--19685
21
2.4
21
86
0
75
27
13
35
23
1.93
19694--19734
21
2.0
21
85
9
57
31
12
31
24
1.92
19921--19973
21
2.5
21
93
0
97
33
33
13
18
1.90
20105--20255
42
3.6
42
89
3
216
19
15
39
24
1.91
21759--21837
34
2.3
35
84
4
106
50
18
10
20
1.75
21837--21905
20
3.8
20
70
21
69
17
17
20
44
1.86
22249--22296
22
2.2
22
85
7
62
18
16
45
18
1.85
22476--22526
20
2.5
20
83
0
66
21
7
31
39
1.82
32992--33080
25
3.3
25
71
19
70
46
1
2
50
1.21
33190--33233
16
2.7
16
80
16
54
52
9
9
29
1.64
39401--39438
13
3.0
13
84
7
51
36
0
0
63
0.95
39798--39855
21
2.7
22
75
17
59
34
10
6
48
1.64
41220--41273
27
2.0
27
89
3
83
53
12
16
16
1.73
42010--42076
19
3.3
19
71
15
62
28
20
17
32
1.96
42165--42191
6
4.5
6
100
0
54
33
51
14
0
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42897--43040
21
7.0
21
69
13
84
35
22
20
22
1.96
42897--43034
42
3.3
42
88
2
208
35
22
19
22
1.96
42897--43059
42
4.0
41
83
7
197
35
21
20
22
1.96
48113--48138
2
13.0
2
100
0
52
50
0
0
50
1.00
48985--49009
3
8.3
3
100
0
50
32
0
0
68
0.90
50956--50982
4
6.8
4
100
0
54
77
0
0
22
0.76
54929--55001
38
1.9
38
88
5
112
41
2
5
50
1.40
56080--56113
2
17.5
2
93
6
61
52
0
0
47
1.00
62749--62806
20
2.6
22
89
10
84
31
20
22
25
1.98
63542--63663
18
6.9
18
83
3
158
19
22
31
26
1.98
63542--63661
52
2.3
52
91
2
186
19
21
32
26
1.97
63919--63957
2
20.0
2
94
5
71
51
0
0
48
1.00
66927--66987
24
2.5
24
89
0
95
36
16
19
27
1.93
67320--67454
53
2.5
53
92
1
225
18
22
30
28
1.97
67322--67454
18
7.4
18
87
1
187
18
22
30
28
1.97
72350--72382
15
2.2
15
94
0
57
54
3
0
42
1.15
74566--74605
16
2.6
16
88
4
55
22
2
5
70
1.19

Tables:   1

The End!