genome.fa.s6973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006973.1 Hibiscus syriacus cultivar Beakdansim tig00017959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138769

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2181--2206	12	2.2	12	100	0	52	34	7	7	50	1.60
5264--5386	29	4.4	26	70	17	77	34	4	0	60	1.18
16394--16556	57	2.8	58	83	3	204	38	6	20	34	1.78
16394--16556	29	5.7	29	77	2	150	38	6	20	34	1.78
22990--23112	29	4.3	28	80	4	138	36	5	23	34	1.79
23003--23151	57	2.6	58	85	4	196	38	6	21	33	1.80
23003--23127	29	4.4	28	77	9	103	37	7	21	33	1.81
27184--27210	2	13.5	2	100	0	54	48	0	0	51	1.00
29103--29175	34	2.1	34	100	0	146	32	8	16	42	1.78
35765--35807	21	2.2	20	87	8	61	27	0	0	72	0.85
35859--36117	88	3.0	86	88	5	378	30	26	16	26	1.96
36842--36878	20	1.9	19	89	10	58	51	10	18	18	1.75
38400--38438	14	2.8	14	84	0	51	30	17	5	46	1.70
38135--38767	323	2.0	318	96	1	1158	52	8	6	32	1.58
38723--38761	14	2.8	14	84	0	51	30	17	5	46	1.70
53132--53202	35	2.0	36	97	2	135	61	2	11	23	1.42
53139--53195	17	3.3	17	68	22	55	66	1	8	22	1.29
69567--69629	25	2.9	22	78	19	69	31	6	30	31	1.83
69603--69639	19	1.9	19	100	0	74	37	5	29	27	1.79
70033--70120	40	2.2	40	89	0	131	36	18	21	23	1.95
70034--70099	21	3.2	21	68	8	64	36	21	22	19	1.95
70286--70338	21	2.5	21	75	6	54	22	22	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70328--70379	21	2.5	21	81	3	61	40	17	21	21	1.91
70368--70445	20	3.9	20	91	0	102	26	26	19	26	1.99
70652--70829	20	8.9	20	98	0	329	36	24	23	15	1.94
70834--70911	20	3.9	20	91	0	111	15	20	24	39	1.91
72464--72553	42	2.2	42	88	4	139	22	15	41	21	1.90
72490--72550	21	2.9	21	73	9	70	21	13	42	22	1.87
72892--72930	20	2.0	20	89	0	60	33	25	12	28	1.93
72960--73018	14	3.9	14	76	20	55	11	16	20	50	1.76
72955--73034	33	2.4	33	93	0	124	12	18	20	48	1.80
72976--73034	19	3.4	19	77	22	83	13	18	18	49	1.80
73019--73062	20	2.2	20	88	4	63	20	22	18	38	1.93
73577--73624	18	2.7	18	90	0	78	14	12	43	29	1.82
74946--75003	20	2.9	20	86	0	71	44	22	17	15	1.86
75497--75610	20	5.7	20	85	6	149	21	18	28	31	1.97
75477--75612	41	3.3	41	85	6	195	22	17	26	33	1.96
75504--75651	41	3.6	41	85	4	140	23	18	25	31	1.98
75806--76018	21	10.4	21	75	6	204	33	25	19	21	1.97
75802--76026	61	3.7	61	88	2	265	34	24	20	21	1.96
75797--75996	101	2.0	101	96	0	373	34	24	19	21	1.96
75799--76029	101	2.3	99	88	5	345	34	23	19	22	1.97
75823--76029	40	5.1	40	81	4	202	34	23	19	22	1.97
76511--76578	19	3.5	19	75	15	68	38	11	16	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83086--83143	18	3.1	18	80	5	53	36	3	3	56	1.33
83112--83145	16	2.1	16	88	0	50	41	0	0	58	0.98
83698--83744	21	2.2	22	88	3	69	38	10	0	51	1.37
86575--86619	23	2.0	23	86	0	63	26	26	26	20	1.99
87307--87349	21	2.0	21	86	0	59	16	25	27	30	1.97
94117--94159	21	2.0	21	86	0	59	16	25	27	30	1.97
99450--99498	12	3.7	13	81	10	55	55	2	0	42	1.11
99439--99497	27	2.1	27	82	14	68	49	1	1	47	1.21
101740--101786	22	2.1	22	88	7	69	61	0	4	34	1.15
103969--104127	79	2.0	79	98	0	309	31	13	18	36	1.90
109147--109226	30	2.7	28	77	11	88	47	5	13	33	1.65
122121--122157	18	2.1	18	89	0	56	29	21	24	24	1.99
122930--122985	23	2.4	23	81	0	76	37	23	21	17	1.94
128912--128946	18	1.9	18	88	0	52	22	37	11	28	1.89
130315--130360	14	3.3	13	85	11	56	8	34	34	21	1.84

Tables:   1

The End!