Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006977.1 Hibiscus syriacus cultivar Beakdansim tig00017967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53399

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--165
2
68.5
2
74
19
111
52
4
0
41
1.27
32--166
19
6.4
21
77
13
102
53
4
0
41
1.26
6186--6251
32
2.2
32
83
8
84
43
1
3
51
1.26
6209--6275
19
3.2
19
70
22
62
47
1
0
50
1.10
6275--6319
18
2.4
18
81
3
54
60
2
0
37
1.09
9644--10443
210
3.8
208
87
5
1107
50
7
12
30
1.66
10468--10777
20
14.9
20
66
17
100
44
4
6
44
1.51
10466--10577
42
2.7
41
76
11
122
45
3
7
43
1.48
10545--10605
27
2.2
28
85
2
79
45
8
6
39
1.60
10647--10684
11
3.5
11
88
0
58
50
2
2
44
1.30
10623--10721
42
2.3
43
81
5
103
47
5
5
42
1.47
10690--10743
17
3.1
17
81
2
63
46
0
3
50
1.19
10834--10906
20
3.4
20
79
17
83
39
6
2
50
1.43
10845--10894
13
3.8
13
72
17
50
38
6
4
52
1.45
10858--10945
33
2.8
32
83
8
108
42
6
5
45
1.54
10968--11136
18
9.4
18
67
24
90
41
10
5
42
1.63
10965--11087
38
3.1
39
80
13
160
42
9
5
42
1.61
11053--11133
33
2.5
31
86
7
117
41
9
7
40
1.66
11061--11128
33
2.1
33
94
0
118
42
10
5
41
1.63
11112--11174
20
3.2
20
84
13
85
42
6
1
49
1.37
11079--11169
33
2.5
35
73
16
80
42
8
3
45
1.51
11244--11397
33
4.5
33
79
15
161
44
7
6
41
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11272--11319
18
2.7
18
78
12
53
52
6
6
35
1.52
11324--11381
17
3.5
17
69
21
59
41
5
6
46
1.53
11484--11598
60
1.9
60
87
0
167
53
3
6
35
1.45
14025--14066
20
2.1
20
90
0
66
33
19
26
21
1.97
16747--16781
18
2.1
16
89
10
52
57
2
0
40
1.14
16792--16878
17
5.3
17
68
18
67
47
5
2
44
1.39
16995--17029
16
2.2
16
89
0
52
31
17
28
22
1.96
24273--24299
3
9.0
3
100
0
54
33
0
0
66
0.92
33872--33929
28
2.1
28
100
0
116
36
20
6
36
1.80
34594--34641
18
2.6
18
86
6
60
47
10
0
41
1.37
34631--34801
61
2.8
60
79
11
197
40
7
0
52
1.33
34631--34801
30
5.7
30
82
6
186
40
7
0
52
1.33
34741--34834
31
3.6
25
78
14
84
42
7
1
48
1.38
34631--34828
60
3.4
56
78
12
170
40
7
1
51
1.36
34832--34998
29
5.8
29
80
5
133
53
2
6
37
1.40
34815--35068
87
2.9
85
76
10
246
55
2
5
36
1.36
34816--35068
30
8.7
29
79
8
219
55
2
5
36
1.36
36657--36732
39
2.0
36
85
7
98
31
10
9
48
1.69

Tables:   1

The End!