Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000698.1 Hibiscus syriacus cultivar Beakdansim tig00001358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56371

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2282--2338
30
1.9
30
89
7
89
7
31
26
35
1.83
3565--3635
27
2.6
26
81
16
74
74
4
8
12
1.19
3573--3699
31
3.8
33
75
15
113
73
2
9
14
1.19
3558--3708
68
2.2
68
82
12
177
73
3
7
15
1.19
4126--4159
17
2.1
17
88
5
52
0
11
23
64
1.26
4680--4746
19
3.5
19
75
18
68
70
0
2
26
1.02
4680--4746
25
2.7
24
80
19
75
70
0
2
26
1.02
4800--4866
33
2.0
34
82
8
84
40
8
4
46
1.56
5015--5074
29
2.1
29
90
9
97
38
10
3
48
1.53
6089--6532
85
5.2
85
85
2
563
23
17
21
36
1.94
11741--11766
11
2.4
11
100
0
52
65
0
0
34
0.93
11759--11809
25
2.1
25
92
3
86
76
3
9
9
1.14
11781--11827
17
2.5
19
83
13
62
74
4
12
8
1.19
11781--11827
19
2.6
18
86
3
67
74
4
12
8
1.19
11799--11864
26
2.4
27
80
9
73
77
4
6
12
1.10
11799--11848
26
2.0
26
88
4
75
78
4
8
10
1.09
12411--12445
17
2.1
18
89
10
56
0
11
22
65
1.24
12957--13042
4
20.8
4
73
16
52
70
0
4
24
1.05
12957--13011
15
3.8
15
83
13
62
76
0
0
23
0.79
12951--13012
19
3.2
19
75
11
54
72
0
1
25
0.94
13204--13459
36
7.0
36
73
17
172
42
7
2
47
1.47
13218--13455
79
3.3
73
76
15
210
42
7
2
47
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13271--13459
35
5.4
34
77
12
152
41
7
3
47
1.47
13345--13417
31
2.3
32
88
9
114
36
8
1
53
1.39
15748--15791
21
2.0
23
86
8
65
50
0
0
50
1.00
15757--15819
22
2.9
21
79
11
56
47
1
0
50
1.10
15784--15832
22
2.2
22
88
0
71
51
2
0
46
1.12
15817--15860
23
1.9
23
95
0
79
56
4
0
38
1.20
15793--15891
53
1.9
50
86
10
137
51
2
0
46
1.12
18772--18818
22
2.1
22
100
0
94
25
21
10
42
1.85
19456--19487
16
2.0
16
100
0
64
31
6
18
43
1.75
19574--19609
2
18.5
2
94
5
65
50
0
0
50
1.00
25086--25124
14
2.8
14
96
0
69
20
30
0
48
1.50
27348--27418
24
2.9
24
83
6
81
40
12
16
29
1.86
27363--27418
24
2.3
24
93
0
94
39
14
16
30
1.88
29136--29179
22
2.0
22
86
0
61
13
20
45
20
1.85
36462--36490
14
2.1
14
100
0
58
0
24
55
20
1.44
45284--45340
29
2.0
29
82
6
71
15
5
12
66
1.41
53085--53203
20
5.9
20
90
0
175
22
21
17
38
1.93
53085--53203
60
2.0
60
93
3
204
22
21
17
38
1.93

Tables:   1

The End!