genome.fa.s6982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006982.1 Hibiscus syriacus cultivar Beakdansim tig00017986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90265

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1110--1147	15	2.5	15	100	0	76	26	21	34	18	1.96
4946--5323	80	4.7	80	93	1	598	32	24	21	21	1.98
7333--7369	15	2.5	15	100	0	74	18	24	5	51	1.67
8319--8358	16	2.4	17	87	4	55	30	27	27	15	1.96
10389--10778	80	4.9	80	90	3	572	32	24	21	21	1.98
12831--12974	63	2.3	63	84	3	173	36	22	18	22	1.95
13382--13427	20	2.2	20	84	3	56	41	2	21	34	1.66
13382--13435	21	2.6	20	85	5	63	40	3	20	35	1.70
13539--13611	18	3.9	18	73	7	74	23	20	27	28	1.99
16595--16643	22	2.1	24	85	7	66	44	2	0	53	1.12
16602--16665	25	2.4	27	77	15	80	45	3	1	50	1.27
16633--16691	30	1.9	31	89	3	93	42	1	3	52	1.28
16800--16868	31	2.2	31	92	0	111	52	11	7	28	1.64
17219--17296	31	2.5	31	87	0	93	23	8	12	55	1.65
18142--18166	2	12.5	2	100	0	50	52	48	0	0	1.00
18166--18212	2	23.5	2	100	0	94	51	0	0	48	1.00
18408--18453	22	2.0	24	87	8	69	43	19	2	34	1.63
18634--18679	23	2.0	23	86	0	65	34	26	19	19	1.96
24347--24399	21	2.5	21	81	0	70	22	24	16	35	1.95
24389--24521	20	6.7	20	92	0	212	39	18	19	22	1.92
24718--24783	22	3.0	22	86	0	96	24	37	15	22	1.92
25121--25249	39	3.3	39	79	5	152	14	16	21	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25121--25249	20	6.6	20	77	6	120	14	16	21	47	1.82
25213--25256	20	2.2	20	87	0	61	13	13	18	54	1.71
27133--27289	20	8.5	20	71	19	101	43	20	17	18	1.88
27336--27407	20	3.6	20	94	0	117	29	19	22	29	1.98
27908--27949	21	2.2	19	87	12	59	21	35	19	23	1.96
29395--29430	14	2.6	14	90	0	54	30	0	22	47	1.52
29536--29631	33	2.9	34	84	3	104	44	18	21	14	1.86
29564--29631	34	2.0	33	88	2	100	48	16	22	13	1.80
29631--29695	20	3.3	20	89	2	69	18	23	24	33	1.96
29638--29719	20	4.1	20	90	3	121	18	21	23	36	1.95
33013--33060	20	2.4	20	86	6	71	27	18	25	29	1.98
33076--33121	21	2.2	21	92	0	74	39	17	26	17	1.91
39464--39667	31	6.7	31	75	9	145	23	8	30	36	1.85
39568--39650	27	2.9	28	81	18	100	24	6	30	39	1.79
39489--39675	31	6.2	31	76	13	151	22	8	31	37	1.85
42060--42089	14	2.1	14	93	0	51	33	6	10	50	1.62
43958--44102	55	2.6	55	92	0	236	26	17	24	31	1.97
44825--44911	44	2.0	44	93	0	147	24	21	25	28	1.99
44825--44889	21	3.0	22	77	22	82	21	23	27	27	1.99
47218--47362	55	2.6	55	91	0	236	28	17	22	31	1.97
48087--48127	21	2.0	21	100	0	82	19	19	29	31	1.96
48087--48165	21	3.7	21	85	10	74	21	21	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51256--51348	21	4.6	20	78	4	96	38	18	24	18	1.92
51253--51348	41	2.3	41	98	0	183	39	17	23	18	1.92
51256--51348	20	4.6	20	78	4	96	38	18	24	18	1.92
51275--51409	41	3.3	41	81	6	123	37	20	21	20	1.94
51334--51384	20	2.5	20	77	3	57	45	19	15	19	1.86
51379--51416	20	2.0	19	85	10	51	26	26	15	31	1.96
51965--52009	19	2.4	19	92	0	72	48	26	15	8	1.74
52005--52189	19	10.1	19	77	14	174	12	22	22	43	1.86
52005--52094	39	2.3	38	94	1	153	12	20	22	45	1.83
52077--52164	33	2.6	33	92	1	140	11	25	25	38	1.89
52132--52189	20	2.9	20	80	10	64	13	24	18	43	1.87
54190--54282	42	2.2	42	80	0	105	22	38	16	22	1.92
55669--55704	14	2.6	14	95	0	63	30	0	25	44	1.54
55863--55980	19	6.7	19	66	19	76	13	23	20	42	1.88
55867--55960	33	2.8	33	98	0	179	12	24	19	43	1.85
59736--59772	14	2.6	14	86	0	56	48	21	0	29	1.50
60132--60179	20	2.4	20	92	0	78	33	22	22	20	1.97
60225--60272	18	2.6	19	93	6	89	14	20	16	47	1.82
60207--60270	18	3.8	18	82	17	84	14	21	18	45	1.85
62265--62331	19	3.5	19	83	4	89	37	23	23	14	1.93
62320--62377	14	3.9	14	79	16	71	48	25	17	8	1.75
62304--62382	32	2.4	33	95	2	142	46	24	18	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62411--62450	14	2.9	14	100	0	80	7	15	27	50	1.70
62451--62494	20	2.2	20	88	4	63	18	22	20	38	1.93
62772--62813	18	2.3	18	87	0	57	19	11	42	26	1.85
62726--62896	85	2.0	84	98	1	333	18	12	42	27	1.86
62857--62901	18	2.5	18	85	0	63	15	15	42	26	1.87
64219--64272	20	2.8	20	80	2	65	48	22	16	12	1.80
64732--64825	20	4.7	20	80	2	89	23	18	24	34	1.96
64752--64829	41	1.9	41	86	0	111	21	16	21	39	1.92
64712--64826	20	5.7	20	78	5	88	23	17	23	35	1.95
64752--64865	41	2.8	41	78	4	106	21	20	21	37	1.94
64813--64865	19	2.7	20	74	8	54	18	24	18	37	1.94
66181--66221	22	1.9	21	90	5	64	70	4	0	24	1.06
69618--69742	42	3.0	42	85	2	171	40	6	17	36	1.75
69964--69993	14	2.1	14	100	0	60	16	23	6	53	1.66
70829--70861	16	2.1	16	100	0	66	57	24	12	6	1.57
70931--70991	16	3.8	16	93	0	104	55	21	13	9	1.66
71729--71814	24	3.6	24	93	0	136	55	23	10	10	1.64
71759--71815	14	4.4	14	80	17	77	56	26	10	7	1.59
71750--71794	10	4.1	10	79	20	54	60	22	8	8	1.55
73734--73800	30	2.2	31	84	7	84	46	10	1	41	1.47
82457--82516	19	3.1	19	76	9	59	40	5	0	55	1.22

Tables:   1

The End!