genome.fa.s6984.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006984.1 Hibiscus syriacus cultivar Beakdansim tig00017994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62949

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437--494	4	14.8	4	77	10	57	74	3	5	17	1.15
381--474	32	3.1	31	80	10	97	71	4	6	18	1.24
435--490	27	2.1	27	83	6	69	75	3	5	16	1.13
10883--10931	19	2.6	19	90	3	73	14	18	34	32	1.91
11194--11225	12	2.7	12	90	0	55	62	0	12	25	1.30
13403--13436	17	2.0	17	94	0	59	14	38	35	11	1.83
14153--14224	36	2.0	36	83	5	92	48	1	4	45	1.30
14345--14381	3	12.3	3	100	0	74	67	32	0	0	0.91
19506--19576	33	2.2	33	87	2	99	40	32	9	16	1.82
21710--21885	74	2.4	72	84	4	219	40	14	11	33	1.82
21991--22182	91	2.1	89	91	1	312	41	12	13	32	1.82
22079--22432	114	3.1	112	89	3	512	42	11	12	34	1.78
28459--28517	24	2.4	25	91	5	95	22	18	22	37	1.94
29570--29628	21	2.7	22	73	5	66	22	23	20	33	1.97
29617--29748	20	6.6	20	92	1	212	39	16	18	25	1.91
29721--29803	20	4.2	20	92	0	130	27	24	20	27	1.99
29677--29803	40	3.2	40	83	4	132	32	21	19	26	1.97
31794--31823	12	2.5	12	94	0	51	50	26	6	16	1.70
31878--32146	139	1.9	139	98	0	520	28	13	15	43	1.84
32117--32261	20	7.6	20	77	9	149	33	21	16	28	1.95
33007--33113	24	4.5	24	72	0	88	47	15	13	23	1.81
33007--33115	48	2.3	48	75	0	110	47	15	13	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34238--34275	18	2.1	18	90	0	58	31	18	0	50	1.47
35587--35641	8	7.5	8	82	17	75	21	25	38	14	1.92
35587--35638	15	3.6	15	84	10	81	23	25	38	13	1.91
35600--35654	21	2.7	21	91	2	85	20	21	41	16	1.90
35615--35681	18	3.6	18	83	6	80	14	17	47	19	1.82
37803--37909	24	4.5	24	72	0	88	47	15	13	23	1.81
37803--37911	48	2.3	48	75	0	110	47	15	13	22	1.81
39031--39068	18	2.1	18	90	0	58	31	18	0	50	1.47
40371--40425	8	7.5	8	82	17	75	21	25	38	14	1.92
40371--40422	15	3.6	15	84	10	81	23	25	38	13	1.91
40384--40438	21	2.7	21	91	2	85	20	21	41	16	1.90
40399--40465	18	3.6	18	83	6	80	14	17	47	19	1.82
41235--41371	34	3.9	34	74	12	132	34	21	19	24	1.96
41269--41381	20	6.0	20	69	13	69	33	20	19	26	1.96
41232--41370	74	1.9	74	90	0	224	34	20	18	25	1.96
41376--41433	20	2.9	20	76	5	64	13	17	24	44	1.85
41555--41593	14	2.8	14	88	0	51	48	12	0	38	1.42
43015--43096	42	2.0	42	82	4	103	20	17	40	21	1.91
43605--43680	20	3.8	20	89	0	107	36	23	19	19	1.95
43723--43770	20	2.4	20	92	0	78	18	20	27	33	1.96
45682--45788	20	5.4	20	85	3	119	45	23	16	14	1.84
46369--46446	20	3.9	20	91	0	111	24	23	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59139--59201	14	4.6	14	75	14	60	33	11	0	55	1.35
59185--59261	30	2.6	30	85	0	91	41	9	1	48	1.43
59321--59386	27	2.5	26	79	16	73	34	0	1	63	1.04
59323--59401	27	3.0	27	78	12	65	35	0	5	59	1.19
59402--59535	30	4.8	27	75	12	94	55	0	8	35	1.35
59461--59551	30	2.9	31	86	6	130	54	0	8	36	1.31
61625--61700	36	2.1	36	82	4	91	22	25	17	35	1.95

Tables:   1

The End!