Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006985.1 Hibiscus syriacus cultivar Beakdansim tig00017996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 663392
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 2 of 5
Found at i:177167 original size:286 final size:286
Alignment explanation
Indices: 176641--177213 Score: 756
Period size: 286 Copynumber: 2.0 Consensus size: 286
176631 ATTTCAGTAG
* *
176641 TGAAACTTAACATTAACTTACACCAACGAAATGAATAGGTAATTCCAACACTAAACTTATCACAT
1 TGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTAAAATTATCACAT
* ** *
176706 AGTTCCAACAGTGAAACTTAATATTGACTTACACCAGTGAAATGAATATGTAATTCCAGCACTAA
66 ACTTCCAACAGTGAAACTTAATATTGACTTACACCAGTGAAACAAATACGTAATTCCAGCACTAA
* * * * *
176771 ACTTATCACCTAATTCCAACAATGAAATTTAACATTGACTTACACCAGTAAAATGAATACGTAAT
131 ACTTATCACATAATTCCAACAATGAAACTTAACATTGACTCACACCAGCAAAATGAATACATAAT
* * * * *
176836 TCCAACATTAAACTTATCACATAATTCCAGCAGCGAAATTTAACATTGACTTACATCAGTGAAAT
196 TCCAACATTAAACTTATCACATAACTCCAGCAGCGAAACTTAACATTGACTTAAACCAATGAAAT
* *
176901 CAATACGTAAC-TCCATCACTAAACTT
261 CAATACAT-ACTTCCAGCACTAAACTT
* * * * * * *
176927 TGAAGCTTAACATTGACTTACA-TAAGTGAAATGAATACGTAATTCTAGCACTAAAATTGTCACA
1 TGAAACTTAACATTAACTTACACCAA-CGAAATGAATACGTAATTCCAACACTAAAATTATCACA
** *
176991 TACTTCCCGCAGTGAAAGTTAACT-TTGACTTACACCAGTGAAACAAATACGTAATTCCAGCACT
65 TACTTCCAACAGTGAAACTTAA-TATTGACTTACACCAGTGAAACAAATACGTAATTCCAGCACT
** * *
177055 AAACTTATCACATAATTCCTGCAGTGAAACTTAACATTGACTCACACCAGCGAAATGAATACATA
129 AAACTTATCACATAATTCCAACAATGAAACTTAACATTGACTCACACCAGCAAAATGAATACATA
* * * * *
177120 ATTCCAGCATTAAATTTATCACCTAACTCCAGGAGTGAAACTTAACATTGACTTAAACCAATGAA
194 ATTCCAACATTAAACTTATCACATAACTCCAGCAGCGAAACTTAACATTGACTTAAACCAATGAA
*
177185 ATGAATACATACTTCCAGCACTAAACTT
259 ATCAATACATACTTCCAGCACTAAACTT
177213 T
1 T
177214 TCACATAAGT
Statistics
Matches: 246, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
285 4 0.02
286 241 0.98
287 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (286 bp):
TGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTAAAATTATCACAT
ACTTCCAACAGTGAAACTTAATATTGACTTACACCAGTGAAACAAATACGTAATTCCAGCACTAA
ACTTATCACATAATTCCAACAATGAAACTTAACATTGACTCACACCAGCAAAATGAATACATAAT
TCCAACATTAAACTTATCACATAACTCCAGCAGCGAAACTTAACATTGACTTAAACCAATGAAAT
CAATACATACTTCCAGCACTAAACTT
Found at i:184009 original size:36 final size:36
Alignment explanation
Indices: 183957--184028 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
183947 AGATTTACTT
183957 GTTTAAATGGAAGGTAATTGTAGTACTGAAGGAGGC
1 GTTTAAATGGAAGGTAATTGTAGTACTGAAGGAGGC
* * *
183993 GTTTGAATGGAGGGTAATTGTAGTACTGCAGGAGGC
1 GTTTAAATGGAAGGTAATTGTAGTACTGAAGGAGGC
184029 TTGATGGAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.07, G:0.36, T:0.28
Consensus pattern (36 bp):
GTTTAAATGGAAGGTAATTGTAGTACTGAAGGAGGC
Found at i:188640 original size:160 final size:160
Alignment explanation
Indices: 188373--188696 Score: 621
Period size: 160 Copynumber: 2.0 Consensus size: 160
188363 TTTCTCTATG
188373 TCAGTGGAGCGGCTATCATAATGCTGTTGATAATTATATTATGGCGCACGTGAAAAGCAAGGAAT
1 TCAGTGGAGCGGCTATCATAATGCTGTTGATAATTATATTATGGCGCACGTGAAAAGCAAGGAAT
*
188438 TGGGCGTAGCTTTAGGAGGTAATGCGCTGGATTTGCTGAGTGAGCCTTTCAATGGGTTGCCGAGC
66 TGGGCGTAGCTTTAGGAGGTAATGCGCTGGATTTGCTGAGTGAGCCTTTCAATGGGCTGCCGAGC
188503 AGGGATATTCTTGGGTGTTCGGTCCCAATT
131 AGGGATATTCTTGGGTGTTCGGTCCCAATT
188533 TCAGTGGAGCGGCTATCATAATGCTGTTGATAATTATATTATGGCGCACGTGAAAAGCAAGGAAT
1 TCAGTGGAGCGGCTATCATAATGCTGTTGATAATTATATTATGGCGCACGTGAAAAGCAAGGAAT
* *
188598 TGGGTGTAGCTTTAGGAGGTAATGCGCTGGATTTGTTGAGTGAGCCTTTCAATGGGCTGCCGAGC
66 TGGGCGTAGCTTTAGGAGGTAATGCGCTGGATTTGCTGAGTGAGCCTTTCAATGGGCTGCCGAGC
188663 AGGGATATTCTTGGGTGTTCGGTCCCAATT
131 AGGGATATTCTTGGGTGTTCGGTCCCAATT
188693 TCAG
1 TCAG
188697 ATGTAGATTC
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
160 161 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.30
Consensus pattern (160 bp):
TCAGTGGAGCGGCTATCATAATGCTGTTGATAATTATATTATGGCGCACGTGAAAAGCAAGGAAT
TGGGCGTAGCTTTAGGAGGTAATGCGCTGGATTTGCTGAGTGAGCCTTTCAATGGGCTGCCGAGC
AGGGATATTCTTGGGTGTTCGGTCCCAATT
Found at i:190074 original size:31 final size:31
Alignment explanation
Indices: 190029--190106 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
190019 ACGATAATAT
* * *
190029 GCTCCCTTGTGAGTCACTCTAATTCTTCGGA
1 GCTCCCGTGCGAGTCACTCTAATCCTTCGGA
190060 GCTCCCGTGCGAGTCACTCTAATCCTTCGGA
1 GCTCCCGTGCGAGTCACTCTAATCCTTCGGA
190091 GCTCCCGTGCGAGTCA
1 GCTCCCGTGCGAGTCA
190107 ACCGAAATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.15, C:0.33, G:0.23, T:0.28
Consensus pattern (31 bp):
GCTCCCGTGCGAGTCACTCTAATCCTTCGGA
Found at i:190144 original size:38 final size:38
Alignment explanation
Indices: 190091--190206 Score: 106
Period size: 38 Copynumber: 3.2 Consensus size: 38
190081 ATCCTTCGGA
*
190091 GCTCCCGTGCGAGTCAACCGAAATAATTACGATTAGGT
1 GCTCCCGTGCAAGTCAACCGAAATAATTACGATTAGGT
*
190129 GCTCCCGTGCAAGTC-ACTC----TAA-T-C-CTTCAGG-
1 GCTCCCGTGCAAGTCAAC-CGAAATAATTACGATT-AGGT
* * *
190160 GCTCCTGTGCAAGTTACCCGAAATAATTACGATTAGGT
1 GCTCCCGTGCAAGTCAACCGAAATAATTACGATTAGGT
190198 GCTCCCGTG
1 GCTCCCGTG
190207 TGAGTCACTC
Statistics
Matches: 60, Mismatches: 7, Indels: 22
0.67 0.08 0.25
Matches are distributed among these distances:
31 16 0.27
32 5 0.08
33 1 0.02
34 3 0.05
35 3 0.05
36 1 0.02
37 6 0.10
38 25 0.42
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
GCTCCCGTGCAAGTCAACCGAAATAATTACGATTAGGT
Found at i:190181 original size:69 final size:69
Alignment explanation
Indices: 190060--190322 Score: 334
Period size: 69 Copynumber: 3.8 Consensus size: 69
190050 ATTCTTCGGA
* *
190060 GCTCCCGTGCGAGTCACTCTAATCCTTC-GGAGCTCCCGTGCGAGTCAACCGAAATAATTACGAT
1 GCTCCCGTGCGAGTCACTCTAATCCTTCAGG-GCTCCTGTGCGAGTCACCCGAAATAATTACGAT
190124 TAGGT
65 TAGGT
* * *
190129 GCTCCCGTGCAAGTCACTCTAATCCTTCAGGGCTCCTGTGCAAGTTACCCGAAATAATTACGATT
1 GCTCCCGTGCGAGTCACTCTAATCCTTCAGGGCTCCTGTGCGAGTCACCCGAAATAATTACGATT
190194 AGGT
66 AGGT
* * * * * * *
190198 GCTCCCGTGTGAGTCACTCTATTCCTTCGGGGCT-TTCGTGCGAGTCA-CCTAGAGTAATCACGA
1 GCTCCCGTGCGAGTCACTCTAATCCTTCAGGGCTCCT-GTGCGAGTCACCCGA-AATAATTACGA
190261 TTAGGT
64 TTAGGT
* * * *
190267 GCTCCCTTGCGAGTCATTCTAATCCTTCAAGGCTCCTGTGCGAGTCACCCGGAATA
1 GCTCCCGTGCGAGTCACTCTAATCCTTCAGGGCTCCTGTGCGAGTCACCCGAAATA
190323 CTCATTATTA
Statistics
Matches: 164, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
68 4 0.02
69 155 0.95
70 5 0.03
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (69 bp):
GCTCCCGTGCGAGTCACTCTAATCCTTCAGGGCTCCTGTGCGAGTCACCCGAAATAATTACGATT
AGGT
Found at i:190261 original size:138 final size:138
Alignment explanation
Indices: 190060--190322 Score: 375
Period size: 138 Copynumber: 1.9 Consensus size: 138
190050 ATTCTTCGGA
*
190060 GCTCCCGTGCGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCGAAATAATTACGATT
1 GCTCCCGTGCGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCGAAATAATCACGATT
* *
190125 AGGTGCTCCCGTGCAAGTCACTCTAATCCTTCAGGGCTCCTGTGCAAGTTACCCGAAATAATTAC
66 AGGTGCTCCCGTGCAAGTCACTCTAATCCTTCAAGGCTCCTGTGCAAGTCACCCGAAATAATTAC
190190 GATTAGGT
131 GATTAGGT
* * * ** * *
190198 GCTCCCGTGTGAGTCACTCTATTCCTTCGGGGCTTTCGTGCGAGTC-ACCTAGAGTAATCACGAT
1 GCTCCCGTGCGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCGA-AATAATCACGAT
* * * * *
190262 TAGGTGCTCCCTTGCGAGTCATTCTAATCCTTCAAGGCTCCTGTGCGAGTCACCCGGAATA
65 TAGGTGCTCCCGTGCAAGTCACTCTAATCCTTCAAGGCTCCTGTGCAAGTCACCCGAAATA
190323 CTCATTATTA
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
137 4 0.04
138 105 0.96
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (138 bp):
GCTCCCGTGCGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCGAAATAATCACGATT
AGGTGCTCCCGTGCAAGTCACTCTAATCCTTCAAGGCTCCTGTGCAAGTCACCCGAAATAATTAC
GATTAGGT
Found at i:190585 original size:76 final size:76
Alignment explanation
Indices: 190453--191311 Score: 1049
Period size: 76 Copynumber: 11.3 Consensus size: 76
190443 ACATTAACAT
* *
190453 GTAATTCCAGCACTAAA-TTAAACACATCACAATTCTAGCAGTGAAACTTAACATTGACTTACAC
1 GTAATTCCAGCACTAAACTT-ATCACAT-A-ATTTC-AGCAGTGAAACTTAACATTGACTTACAC
190517 CAGTGAAATGAATAC
62 CAGTGAAATGAATAC
* * * * *
190532 GTAATTCTAGCACTAAACTTATGACATGATTTCAGCAATGAAACTTAACATTGACTTACACCAGA
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
190597 GAAATGAATAC
66 GAAATGAATAC
* * * ** *
190608 GTAATTCAAGCACCAAACTTATCACTTCTTTTCACCAGTGAAACTTAACATTGACTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
*
190673 AAAATGAATAC
66 GAAATGAATAC
* * * * *
190684 GTAATTTCAGCGCTAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAAT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
*
190749 GAAATGAGTAC
66 GAAATGAATAC
* * * * * *
190760 ATAATTCCAACACTAAACTTATCACATAATTGCAACAGTGAAAGTTAACATGGACTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
*
190825 GAAATGAATAT
66 GAAATGAATAC
* * *
190836 GTAATTCCAGCACTAAACTTATGACATGATTTCAGCAGTGAAACTTAACATTGACTTACACCAGA
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
190901 GAAATGAATAC
66 GAAATGAATAC
* * * * *
190912 GTAATTCAAGCACCAAACTTATCACATTATTTCAGCAGTGAAATTTAACATTGTCTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
* * *
190977 AAAATAAATAT
66 GAAATGAATAC
* * * **
190988 GTAATTCCAGCGCTAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAAC
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
191053 GAAATGAATAC
66 GAAATGAATAC
* * * **
191064 GTAATTCCAACACTAAACTTATCACATAGTTCCAATAGTGAAACTTAACATTGACTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
*
191129 GAAATGAATAT
66 GAAATGAATAC
* * * * * *
191140 GTAATTCCAACACTAAACTTATCACCTAATTCCAACAATGAAATTTAACATTGACTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
191205 -AAAGTGAATAC
66 GAAA-TGAATAC
* * * * * ** *
191216 GTAATTCCAACATTAAACTTATCACATAATTCCAGCA-TCAAAATTTATTATTGACTTACATCAG
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGT-GAAACTTAACATTGACTTACACCAG
*
191280 TGAAATCAATAC
65 TGAAATGAATAC
* *
191292 GTAACTCCATCACTAAACTT
1 GTAATTCCAGCACTAAACTT
191312 TGAAGCTTAA
Statistics
Matches: 674, Mismatches: 102, Indels: 11
0.86 0.13 0.01
Matches are distributed among these distances:
75 4 0.01
76 640 0.95
77 7 0.01
79 21 0.03
80 2 0.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (76 bp):
GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
GAAATGAATAC
Found at i:190889 original size:228 final size:227
Alignment explanation
Indices: 190453--191675 Score: 1270
Period size: 228 Copynumber: 5.4 Consensus size: 227
190443 ACATTAACAT
* * *
190453 GTAATTCCAGCACTAAA-TTAAACACATCACAATTCTAGCAGTGAAACTTAACATTGACTTACAC
1 GTAATTTCAGCACTAAACTT-ATCACAT-A-ATTTC-AGCAGTGAAACTTAACATTGACTTACAC
* * * * *
190517 CAGTGAAATGAATACGTAATTCTAGCACTAAACTTATGACATGATTTCAGCAATGAAACTTAACA
62 CAGTGAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACA
* * * * * *
190582 TTGACTTACACCAGAGAAATGAATACGTAATTCAAGCACCAAACTTATCACTTCTTTTCACCAGT
127 TTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACAT-ATTTCAACAGT
190647 GAAACTTAACATTGACTTACACCAGTAAAATGAATAC
191 GAAACTTAACATTGACTTACACCAGTAAAATGAATAC
* * * *
190684 GTAATTTCAGCGCTAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAAT
1 GTAATTTCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
* * * * * *
190749 GAAATGAGTACATAATTCCAACACTAAACTTATCACATAATTGCAACAGTGAAAGTTAACATGGA
66 GAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGA
* * *
190814 CTTACACCAGTGAAATGAATATGTAATTCCAGCACTAAACTTATGACATGATTTCAGCAGTGAAA
131 CTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACAT-ATTTCAACAGTGAAA
190879 CTTAACATTGACTTACACCAG-AGAAATGAATAC
195 CTTAACATTGACTTACACCAGTA-AAATGAATAC
* * * *
190912 GTAA-TTCAAGCACCAAACTTATCACATTATTTCAGCAGTGAAATTTAACATTGTCTTACACCAG
1 GTAATTTC-AGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAG
* * * * * * *
190976 TAAAATAAATATGTAATTCCAGCGCTAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTA
65 TGAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTG
** * * *
191041 ACTTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCACATAGTTCCAATAGTGAA
130 ACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATA-TTTCAACAGTGAA
* *
191106 ACTTAACATTGACTTACACCAGTGAAATGAATAT
194 ACTTAACATTGACTTACACCAGTAAAATGAATAC
* * * * * * *
191140 GTAATTCCAACACTAAACTTATCACCTAATTCCAACAATGAAATTTAACATTGACTTACACCAGT
1 GTAATTTCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
* * * * **
191205 -AAAGTGAATACGTAATTCCAACATTAAACTTATCACATAATTCCAGCA-TCAAAATTTATTATT
66 GAAA-TGAATACGTAATTCCAACACTAAACTTATCACATAATTTCAGCAGT-GAAACTTAACATT
* * * *
191268 GACTTACATCAGTGAAATCAATACGTAACTCCATCACT--A---A--AC----TT------TGAA
129 GACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATATTTCAACAGTGAA
* ** *
191316 GCTTAACATTGACTTACATAAGTGAAATGAATAC
194 ACTTAACATTGACTTACACCAGTAAAATGAATAC
* * * * *
191350 GTAA-TTCTAGCACTAAAATTATCACATAATATCCGCAGTGAAAGTTAACTTTGACTTACACCAG
1 GTAATTTC-AGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAG
* * * * *
191414 TGAAACGAATACATAATTCCAGCACTAAACTTATCACATAATTCCTGCAGTGAAACTTAACATTG
65 TGAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTG
* * * * * * *
191479 ACTTACACCAGCGAAATGAATACATAATTCCAGCATTAAATTTATCACTTAATTCCAAGAGTGAA
130 ACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACAT-ATTTCAACAGTGAA
* * * *
191544 ATTTAACATTGACTTAAACCAATGAAATGAATAC
194 ACTTAACATTGACTTACACCAGTAAAATGAATAC
* * * * * * * * *
191578 ATACTTCCAGCACTAAACTTTTCACATAA-GTCAAGGAGTGAGACTGAACATTGACTTACACTAG
1 GTAATTTCAGCACTAAACTTATCACATAATTTC-AGCAGTGAAACTTAACATTGACTTACACCAG
* *
191642 TGAAATGAATTCGTAATTCCAGCACTAAACTTAT
65 TGAAATGAATACGTAATTCCAACACTAAACTTAT
191676 GATTTCAATA
Statistics
Matches: 821, Mismatches: 140, Indels: 65
0.80 0.14 0.06
Matches are distributed among these distances:
209 2 0.00
210 164 0.20
211 4 0.00
212 1 0.00
215 1 0.00
216 1 0.00
217 2 0.00
221 2 0.00
222 1 0.00
223 1 0.00
226 1 0.00
227 11 0.01
228 598 0.73
229 8 0.01
230 1 0.00
231 21 0.03
232 2 0.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (227 bp):
GTAATTTCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
GAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGA
CTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATATTTCAACAGTGAAAC
TTAACATTGACTTACACCAGTAAAATGAATAC
Found at i:191425 original size:134 final size:134
Alignment explanation
Indices: 191184--191445 Score: 334
Period size: 134 Copynumber: 2.0 Consensus size: 134
191174 ACAATGAAAT
* * *
191184 TTAACATTGACTTACACCAGTAAAGTGAATACGTAATTCCAACATTAAACTTATCACATAATTCC
1 TTAACATTGACTTACACAAGTAAAGTGAATACGTAATTCCAACACTAAAATTATCACATAATTCC
* * * * *
191249 AGCATCAAAATTTATTATTGACTTACATCAGTGAAATCAATACGTAACTCCATCACTAAACTTTG
66 AGCATCAAAATTAACTATTGACTTACACCAGTGAAATCAATACATAACTCCAGCACTAAACTTTG
191314 AAGC
131 AAGC
* * *
191318 TTAACATTGACTTACATAAGTGAAA-TGAATACGTAATTCTAGCACTAAAATTATCACATAATAT
1 TTAACATTGACTTACACAAGT-AAAGTGAATACGTAATTCCAACACTAAAATTATCACATAAT-T
* * *
191382 CC-GCAGTGAAAGTTAACT-TTGACTTACACCAGTGAAA-CGAATACATAATTCCAGCACTAAAC
64 CCAGCA-TCAAAATTAACTATTGACTTACACCAGTGAAATC-AATACATAACTCCAGCACTAAAC
191444 TT
127 TT
191446 ATCACATAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
133 1 0.01
134 95 0.86
135 14 0.13
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (134 bp):
TTAACATTGACTTACACAAGTAAAGTGAATACGTAATTCCAACACTAAAATTATCACATAATTCC
AGCATCAAAATTAACTATTGACTTACACCAGTGAAATCAATACATAACTCCAGCACTAAACTTTG
AAGC
Found at i:191448 original size:76 final size:76
Alignment explanation
Indices: 191312--191675 Score: 453
Period size: 76 Copynumber: 4.8 Consensus size: 76
191302 CACTAAACTT
* ** * * *
191312 TGAAGCTTAACATTGACTTACATAAGTGAAATGAATACGTAATTCTAGCACTAAAATTATCACAT
1 TGAAACTTAACATTGACTTACACCAGTGAAATGAATACATAATTCCAGCACTAAACTTATCACAT
191377 AATATCC-GCAG
66 AAT-TCCAGCAG
* * *
191388 TGAAAGTTAACTTTGACTTACACCAGTGAAACGAATACATAATTCCAGCACTAAACTTATCACAT
1 TGAAACTTAACATTGACTTACACCAGTGAAATGAATACATAATTCCAGCACTAAACTTATCACAT
*
191453 AATTCCTGCAG
66 AATTCCAGCAG
* * * *
191464 TGAAACTTAACATTGACTTACACCAGCGAAATGAATACATAATTCCAGCATTAAATTTATCACTT
1 TGAAACTTAACATTGACTTACACCAGTGAAATGAATACATAATTCCAGCACTAAACTTATCACAT
191529 AATTCCAAG-AG
66 AATTCC-AGCAG
* * * * *
191540 TGAAATTTAACATTGACTTAAACCAATGAAATGAATACATACTTCCAGCACTAAACTTTTCACAT
1 TGAAACTTAACATTGACTTACACCAGTGAAATGAATACATAATTCCAGCACTAAACTTATCACAT
* * *
191605 AAGTCAAGGAG
66 AATTCCAGCAG
* * * * *
191616 TGAGACTGAACATTGACTTACACTAGTGAAATGAATTCGTAATTCCAGCACTAAACTTAT
1 TGAAACTTAACATTGACTTACACCAGTGAAATGAATACATAATTCCAGCACTAAACTTAT
191676 GATTTCAATA
Statistics
Matches: 247, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
75 5 0.02
76 241 0.98
77 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (76 bp):
TGAAACTTAACATTGACTTACACCAGTGAAATGAATACATAATTCCAGCACTAAACTTATCACAT
AATTCCAGCAG
Found at i:191452 original size:25 final size:26
Alignment explanation
Indices: 191424--191472 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
191414 TGAAACGAAT
191424 ACATAATTCCAGCACT-AAACTTATC
1 ACATAATTCCAGCACTGAAACTTATC
* *
191449 ACATAATTCCTGCAGTGAAACTTA
1 ACATAATTCCAGCACTGAAACTTA
191473 ACATTGACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (26 bp):
ACATAATTCCAGCACTGAAACTTATC
Found at i:191481 original size:210 final size:210
Alignment explanation
Indices: 191102--191510 Score: 536
Period size: 210 Copynumber: 1.9 Consensus size: 210
191092 GTTCCAATAG
* * * *
191102 TGAAACTTAACATTGACTTACACCAGTGAAATGAATATGTAATTCCAACACTAAACTTATCACCT
1 TGAAACTTAACATTGACTTACACAAGTGAAATGAATACGTAATTCCAACACTAAAATTATCACAT
* * * *
191167 AATTCCAACAATGAAATTTAACATTGACTTACACCAGTAAAGTGAATACGTAATTCCAACATTAA
66 AATTCCAACAATGAAAGTTAACATTGACTTACACCAGTAAAGCGAATACATAATTCCAACACTAA
* ** * * *
191232 ACTTATCACATAATTCCAGCATCAAAATTTATTATTGACTTACATCAGTGAAATCAATACGTAAC
131 ACTTATCACATAATTCCAGCATCAAAACTTAACATTGACTTACACCAGCGAAATCAATACATAAC
191297 TCCATCACTAAACTT
196 TCCATCACTAAACTT
* * * *
191312 TGAAGCTTAACATTGACTTACATAAGTGAAATGAATACGTAATTCTAGCACTAAAATTATCACAT
1 TGAAACTTAACATTGACTTACACAAGTGAAATGAATACGTAATTCCAACACTAAAATTATCACAT
* * * *
191377 AATATCC-GCAGTGAAAGTTAACTTTGACTTACACCAGTGAAA-CGAATACATAATTCCAGCACT
66 AAT-TCCAACAATGAAAGTTAACATTGACTTACACCAGT-AAAGCGAATACATAATTCCAACACT
* * *
191440 AAACTTATCACATAATTCCTGCAGT-GAAACTTAACATTGACTTACACCAGCGAAATGAATACAT
129 AAACTTATCACATAATTCCAGCA-TCAAAACTTAACATTGACTTACACCAGCGAAATCAATACAT
*
191504 AATTCCA
193 AACTCCA
191511 GCATTAAATT
Statistics
Matches: 170, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
210 163 0.96
211 7 0.04
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (210 bp):
TGAAACTTAACATTGACTTACACAAGTGAAATGAATACGTAATTCCAACACTAAAATTATCACAT
AATTCCAACAATGAAAGTTAACATTGACTTACACCAGTAAAGCGAATACATAATTCCAACACTAA
ACTTATCACATAATTCCAGCATCAAAACTTAACATTGACTTACACCAGCGAAATCAATACATAAC
TCCATCACTAAACTT
Found at i:198212 original size:21 final size:21
Alignment explanation
Indices: 198188--198228 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
198178 GGCACATAAA
198188 TTTTCTAAAATACAAATTTTC
1 TTTTCTAAAATACAAATTTTC
* * *
198209 TTTTTTGAAATTCAAATTTT
1 TTTTCTAAAATACAAATTTT
198229 TTTAATTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTTCTAAAATACAAATTTTC
Found at i:199410 original size:76 final size:76
Alignment explanation
Indices: 199273--199611 Score: 372
Period size: 76 Copynumber: 4.5 Consensus size: 76
199263 ATATCCATCT
* * * * * * * * *
199273 GTGAAATCAATACGTAACTCAATCACTAAAATTATCACATAATTCCCGCAATGAAAGTTAACTTT
1 GTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATT
*
199338 GACTTACACTA
66 GACTTACACCA
* * *
199349 GTTAAAGGAATACGTAATTCCAGCACTAAACTTATCACATAATTCCTGCAGTGAAACTTAACATT
1 GTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATT
199414 GACTTACACCA
66 GACTTACACCA
* * * * * * * *
199425 GCGAAATGAAGACATAATTCCAGCATTAAATTTATAACCTAATTCCAGTAGTGAAACTTAACATT
1 GTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATT
*
199490 GACTTAAACCA
66 GACTTACACCA
* * * * * * * * * * *
199501 ATGAAATGAATACATACTTCCAGCATTAAACTTTTCACATAAGTCAAGGAGTGAGACTGAACATC
1 GTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATT
*
199566 GACTTACACTA
66 GACTTACACCA
199577 GTGAAATGAATACGTAATTCCAGCACTAAACTTAT
1 GTGAAATGAATACGTAATTCCAGCACTAAACTTAT
199612 GATTTCACAT
Statistics
Matches: 218, Mismatches: 45, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
76 218 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (76 bp):
GTGAAATGAATACGTAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATT
GACTTACACCA
Found at i:200632 original size:3 final size:3
Alignment explanation
Indices: 200624--200661 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
200614 TCCTAGTTAA
*
200624 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
200662 CATTTTACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:204561 original size:24 final size:24
Alignment explanation
Indices: 204524--204579 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
204514 ACGTATTGTG
*
204524 ATGACTTATGGATTATGACTGCTAT
1 ATGA-TTATGGATTATCACTGCTAT
* * * *
204549 CTGATTATTGATTTTCACTGGTAT
1 ATGATTATGGATTATCACTGCTAT
204573 ATGATTA
1 ATGATTA
204580 CAATGATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.45
Consensus pattern (24 bp):
ATGATTATGGATTATCACTGCTAT
Found at i:237245 original size:29 final size:29
Alignment explanation
Indices: 237163--237245 Score: 75
Period size: 28 Copynumber: 2.9 Consensus size: 29
237153 AAACTTCAAC
* * *
237163 TTGACTTCCTCGTGAAGAGAAGTCAATCT
1 TTGACTTCCTCTTAAAGAGAAGTCAATCA
* *
237192 TTGTTA-TT-C-CTAAAAAAGAA-TCAATCA
1 TTG--ACTTCCTCTTAAAGAGAAGTCAATCA
237219 TTGACTTCCTCTTAAAGAGAAGTCAAT
1 TTGACTTCCTCTTAAAGAGAAGTCAAT
237246 ATTTGTTATC
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
25 1 0.02
26 2 0.05
27 10 0.24
28 16 0.39
29 9 0.22
30 2 0.05
31 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (29 bp):
TTGACTTCCTCTTAAAGAGAAGTCAATCA
Found at i:237257 original size:29 final size:29
Alignment explanation
Indices: 237177--237257 Score: 71
Period size: 28 Copynumber: 2.9 Consensus size: 29
237167 CTTCCTCGTG
* *
237177 AAGAGAAGTCAATCTTTGTTATTC-CTAA
1 AAGAGAAGTCAATATTTGTTATCCTCTAA
* * *
237205 AAAAGAA-TCAATCA-TTGACT-TCCTCTTA
1 AAGAGAAGTCAAT-ATTTG-TTATCCTCTAA
237233 AAGAGAAGTCAATATTTGTTATCCT
1 AAGAGAAGTCAATATTTGTTATCCT
237258 TGACTCCCTC
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
27 10 0.25
28 18 0.45
29 12 0.30
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (29 bp):
AAGAGAAGTCAATATTTGTTATCCTCTAA
Found at i:237430 original size:27 final size:27
Alignment explanation
Indices: 237394--237471 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 27
237384 CTTCCTCGCG
237394 AAGAGAAGTCAATCTTTTTTATTCCTA
1 AAGAGAAGTCAATCTTTTTTATTCCTA
* * *
237421 AAGAGGAGTCAATCCTTGATTTT-CTCGTA
1 AAGAGAAGTCAAT-CTT--TTTTATTCCTA
*
237450 AAGAGAAGTCAATCTTTGTTAT
1 AAGAGAAGTCAATCTTTTTTAT
237472 CCTTGACTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
26 3 0.07
27 12 0.29
28 6 0.15
29 16 0.39
30 4 0.10
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (27 bp):
AAGAGAAGTCAATCTTTTTTATTCCTA
Found at i:237434 original size:94 final size:94
Alignment explanation
Indices: 237231--237434 Score: 304
Period size: 94 Copynumber: 2.2 Consensus size: 94
237221 GACTTCCTCT
* * ** *
237231 TAAAGAGAAGTCAATATTTGTTATCCTTGACTCCCTCGTGTAGAGGAACAAATCATTGACTTCCT
1 TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATAAAGAGGAACAAATCATTAACTTCCT
*
237296 CGGGAAGAGAAGCTAATCTTTTTTATTCC
66 CGCGAAGAGAAGCTAATCTTTTTTATTCC
*
237325 TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATAAAGAGGAACCAATGC-TTAACTTCC
1 TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATAAAGAGGAACAAAT-CATTAACTTCC
237389 TCGCGAAGAGAAG-TCAATCTTTTTTATTCC
65 TCGCGAAGAGAAGCT-AATCTTTTTTATTCC
*
237419 TAAAGAGGAGTCAATC
1 TAAAGAGAAGTCAATC
237435 CTTGATTTTC
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
93 1 0.01
94 98 0.98
95 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (94 bp):
TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATAAAGAGGAACAAATCATTAACTTCCT
CGCGAAGAGAAGCTAATCTTTTTTATTCC
Found at i:237481 original size:94 final size:94
Alignment explanation
Indices: 237383--237765 Score: 368
Period size: 94 Copynumber: 4.2 Consensus size: 94
237373 CCAATGCTTA
* * *
237383 ACTTCCTCGCGAAGAGAAGTCAATCTTTTTTATTCCTAAAGAGGAGTCAATCCTTGATTTTCTCG
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGATTTTCTCG
237448 TAAAGAGAAGTCAATCTTTGTTATCCTTG
66 TAAAGAGAAGTCAATCTTTGTTATCCTTG
** * * *
237477 ACTTCCTTATGAAGAGTAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTTCTCG
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGATTTTCTCG
* *
237542 TGAAGAAAAGTCAATCTTTGTTATTCC-TG
66 TAAAGAGAAGTCAATCTTTGTTA-TCCTTG
* * * *
237571 ACTACCTCGTGAAGAGGAA-CCAATCCTTG--ACTTCCTCATGAAGAGAAGTCAATCTTTG-TTA
1 ACTTCCTCGTGAAGA-GAAGTCAATCTTTGTTA-TTCCT-A--AAGAGAAGTCAATCCTTGATT-
* *
237632 TT-TC-TAAAGAGGAGTC-A--------ATCCTTC
60 TTCTCGTAAAGAGAAGTCAATCTTTGTTATCCTTG
* * *
237656 ACTTCCTCTTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAATCAATCCTTGA-CTTCTTC
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGATTTTC-TC
* *
237720 GTGAAGATAAGTCAATCTTTGTTATCCTTG
65 GTAAAGAGAAGTCAATCTTTGTTATCCTTG
* *
237750 ACTCCCTCGTAAAGAG
1 ACTTCCTCGTGAAGAG
237766 TAACCAATCC
Statistics
Matches: 230, Mismatches: 35, Indels: 48
0.73 0.11 0.15
Matches are distributed among these distances:
82 2 0.01
83 16 0.07
84 8 0.03
85 33 0.14
86 6 0.03
87 1 0.00
92 1 0.00
93 6 0.03
94 131 0.57
95 8 0.03
96 18 0.08
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (94 bp):
ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGATTTTCTCG
TAAAGAGAAGTCAATCTTTGTTATCCTTG
Found at i:237524 original size:27 final size:27
Alignment explanation
Indices: 237488--237569 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
237478 CTTCCTTATG
*
237488 AAGAGTAGTCAATCTTTGTTATTCCTA
1 AAGAGAAGTCAATCTTTGTTATTCCTA
* * * *
237515 AAGAGGAGTCAATCCTTGACTT-TCTCGTG
1 AAGAGAAGTCAATCTTTG--TTAT-TCCTA
*
237544 AAGAAAAGTCAATCTTTGTTATTCCT
1 AAGAGAAGTCAATCTTTGTTATTCCT
237570 GACTACCTCG
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
27 21 0.49
28 2 0.05
29 20 0.47
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
AAGAGAAGTCAATCTTTGTTATTCCTA
Found at i:237554 original size:123 final size:120
Alignment explanation
Indices: 237427--237744 Score: 295
Period size: 123 Copynumber: 2.7 Consensus size: 120
237417 CCTAAAGAGG
* ** *
237427 AGTCAATCCTTGATT-TTCTCGTAAAGAGAAGTCAATCTTTGTTATCCTTGACTTCCTTATGAAG
1 AGTCAATCTTTGATTCTTCTCGTAAAGAGAAGTCAATC----CAATCCTTGACTTCCTCATGAAG
* * *
237491 AGTAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTTCTCGTGAAGAAA
62 AGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTCACTTCCTCGTGAAGAAA
*
237550 AGTCAATCTTTGTTATTCCTGACTACCTCGTGAAGAG--G--AA-CCAATCCTTGACTTCCTCAT
1 AGTCAATCTTTG--ATT-CT---T--CTCGTAAAGAGAAGTCAATCCAATCCTTGACTTCCTCAT
* * *
237610 GAAGAGAAGTCAATCTTTGTTATTTCTAAAGAGGAGTCAATCCTTCACTTCCTCTTGAAGAGA
58 GAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTCACTTCCTCGTGAAGAAA
* * * *
237673 AGTCAATCTTTG-TTATTC-C-TAAAGAG-A---AAT-CAATCCTTGACTTCTTCGTGAAGATAA
1 AGTCAATCTTTGATTCTTCTCGTAAAGAGAAGTCAATCCAATCCTTGACTTCCTCATGAAGAGAA
237730 GTCAATCTTTGTTAT
66 GTCAATCTTTGTTAT
237745 CCTTGACTCC
Statistics
Matches: 168, Mismatches: 16, Indels: 33
0.77 0.07 0.15
Matches are distributed among these distances:
112 47 0.28
113 1 0.01
114 1 0.01
116 1 0.01
119 1 0.01
120 2 0.01
123 96 0.57
125 3 0.02
127 2 0.01
128 2 0.01
130 2 0.01
132 10 0.06
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (120 bp):
AGTCAATCTTTGATTCTTCTCGTAAAGAGAAGTCAATCCAATCCTTGACTTCCTCATGAAGAGAA
GTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTCACTTCCTCGTGAAGAAA
Found at i:237555 original size:217 final size:215
Alignment explanation
Indices: 237166--237688 Score: 617
Period size: 217 Copynumber: 2.4 Consensus size: 215
237156 CTTCAACTTG
* * * *
237166 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAAAAGAATCAATCATTGACTTCCTCT
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCT
* * *
237231 TAAAGAGAAGTCAATATTTGTTATCCTTGACTCCCTCGTGTAGAGGAACAAATCATTGACTTCCT
66 TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATGAAGAGGAACAAATCATTGACTTCCT
* * * * *
237296 CGGGAAGAGAAGCTAATCTTTTTTATTCCTAAAGAGAAGTCAATCTTTGTTA-TCCTTGACTCCC
131 --GAAAGAGAAGCTAATCTTCTTTACTCCTAAAGAAAAGTCAATCTTTGTTATTCC-TGACTACC
*
237360 TCATAAAGAGGAACCAATGCTTA
193 TCATAAAGAGGAACCAATCCTTA
* * * * *
237383 ACTTCCTCGCGAAGAGAAGTCAATCTTTTTTATTCCTAAAGAGGAGTCAATCCTTGATTTTCTCG
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCT
* * * * *
237448 TAAAGAGAAGTCAATCTTTGTTATCCTTGACTTCCTTATGAAGAGTAGTC-AATCTTTGTTA-TT
66 TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATGAAGAGGA-ACAAATCATTG--ACTT
* * *
237511 CCT-AAAGAGGAG-TCAATCCTTGACTTT-CTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGAC
128 CCTGAAAGAGAAGCT-AAT-CTT--CTTTACTCCTAAAGAAAAGTCAATCTTTGTTATTCCTGAC
* * *
237573 TACCTCGTGAAGAGGAACCAATCCTTG
189 TACCTCATAAAGAGGAACCAATCCTTA
* * *
237600 ACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTTCTAAAGAGGAGTCAATCCTTCACTTCCTCT
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCT
*
237665 TGAAGAGAAGTCAATCTTTGTTAT
66 TAAAGAGAAGTCAATCTTTGTTAT
237689 TCCTAAAGAG
Statistics
Matches: 260, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
214 1 0.00
215 10 0.04
216 3 0.01
217 233 0.90
218 12 0.05
219 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (215 bp):
ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCT
TAAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATGAAGAGGAACAAATCATTGACTTCCT
GAAAGAGAAGCTAATCTTCTTTACTCCTAAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCA
TAAAGAGGAACCAATCCTTA
Found at i:237556 original size:56 final size:56
Alignment explanation
Indices: 237470--237744 Score: 316
Period size: 56 Copynumber: 4.7 Consensus size: 56
237460 AATCTTTGTT
* * *
237470 ATCCTTGACTTCCTTATGAAGAGTAGTCAATCTTTGTTATTCCTAAAGAGGAGTCA
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAATCA
* * * *
237526 ATCCTTGACTTTCTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCGTGAAGAGGAAC
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATT-C---CTA-------AAGAGGAAT
237591 CA
55 CA
* *
237593 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTTCTAAAGAGGAGTCA
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAATCA
* * *
237649 ATCCTTCACTTCCTCTTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAATCA
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAATCA
* * *
237705 ATCCTTGACTTCTTCGTGAAGATAAGTCAATCTTTGTTAT
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTAT
237745 CCTTGACTCC
Statistics
Matches: 186, Mismatches: 22, Indels: 22
0.81 0.10 0.10
Matches are distributed among these distances:
56 132 0.71
57 1 0.01
60 3 0.02
63 3 0.02
67 47 0.25
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (56 bp):
ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAATCA
Found at i:237699 original size:27 final size:27
Alignment explanation
Indices: 237611--237744 Score: 106
Period size: 29 Copynumber: 4.8 Consensus size: 27
237601 CTTCCTCATG
*
237611 AAGAGAAGTCAATCTTTGTTATTTCTA
1 AAGAGAAGTCAATCTTTGTTATTCCTA
* ** ** * *
237638 AAGAGGAGTCAATCCTTCACTTCCTCTTG
1 AAGAGAAGTCAAT-CTT-TGTTATTCCTA
237667 AAGAGAAGTCAATCTTTGTTATTCCTA
1 AAGAGAAGTCAATCTTTGTTATTCCTA
* * * * *
237694 AAGAGAAATCAATCCTTGACTTCTTCGTG
1 AAGAGAAGTCAATCTTTG--TTATTCCTA
*
237723 AAGATAAGTCAATCTTTGTTAT
1 AAGAGAAGTCAATCTTTGTTAT
237745 CCTTGACTCC
Statistics
Matches: 79, Mismatches: 24, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
27 36 0.46
28 6 0.08
29 37 0.47
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (27 bp):
AAGAGAAGTCAATCTTTGTTATTCCTA
Found at i:238087 original size:82 final size:82
Alignment explanation
Indices: 237863--238061 Score: 299
Period size: 82 Copynumber: 2.4 Consensus size: 82
237853 CAATCTCGAG
237863 TCTGATCTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGA
1 TCTGA-CTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGA
* *
237928 CCCGTATTCCAAAGTTGA
65 CCAGTATTCCAAAATTGA
* * * *
237946 CCTGACTACCCGAAGAAGATGAACAGATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGAC
1 TCTGACTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGAC
* *
238011 TAGTCTTCCAAAATTGA
66 CAGTATTCCAAAATTGA
* *
238028 TCTGACTACCCAAAAAAGAGGAACATTTCAAGTC
1 TCTGACTACCCGAAAAAGAGGAACATATCAAGTC
238062 CAATTTACCC
Statistics
Matches: 102, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
82 98 0.96
83 4 0.04
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (82 bp):
TCTGACTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGAC
CAGTATTCCAAAATTGA
Found at i:238239 original size:3 final size:3
Alignment explanation
Indices: 238224--238302 Score: 79
Period size: 3 Copynumber: 26.3 Consensus size: 3
238214 TCCTAGTTAA
* * *
238224 TAT TAT AAT TAT TAT TCT TAT TAT TAT TAT TAT TAT TA- TAT AAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * *
238269 TAT TAT TAT TAC AAT TAT TAT TAT GAT AAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
238303 TACATTTTAC
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
2 2 0.03
3 57 0.93
4 2 0.03
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:242501 original size:3 final size:3
Alignment explanation
Indices: 242493--242522 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
242483 TTTTTCGTCC
242493 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
242523 AAATCAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:244364 original size:29 final size:29
Alignment explanation
Indices: 244276--244364 Score: 71
Period size: 28 Copynumber: 3.1 Consensus size: 29
244266 CAACTTGACT
* *
244276 TCCTCGTGAAGAGAAGTCAATCTTTGTTA
1 TCCTCATGAAGAGAAGTCAATATTTGTTA
* * *
244305 TTCCT-A-AAAAAGAA-TCAATCA-TTGACT-
1 -TCCTCATGAAGAGAAGTCAAT-ATTTG-TTA
244332 TCCTCATGAAGAGAAGTCAATATTTGTTA
1 TCCTCATGAAGAGAAGTCAATATTTGTTA
244361 TCCT
1 TCCT
244365 TGACTCCCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 15
0.66 0.12 0.22
Matches are distributed among these distances:
26 4 0.09
27 9 0.20
28 15 0.34
29 12 0.27
30 4 0.09
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (29 bp):
TCCTCATGAAGAGAAGTCAATATTTGTTA
Found at i:244513 original size:29 final size:28
Alignment explanation
Indices: 244481--244570 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 28
244471 AAAGAGGAAC
244481 CAATCCTTAACTTCCTCGCGAAGAGAAGT
1 CAATCCTTAACTTCCTCG-GAAGAGAAGT
* * * *
244510 CAATCTTTTTTA-TTCCT--AAAGAGGAGT
1 CAATC--CTTAACTTCCTCGGAAGAGAAGT
*
244537 CAATCCTTGACTTCCTCGTGAAGAGAAGT
1 CAATCCTTAACTTCCTCG-GAAGAGAAGT
244566 CAATC
1 CAATC
244571 TTTGTTATCC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
25 3 0.06
26 5 0.11
27 13 0.28
29 18 0.38
30 5 0.11
31 3 0.06
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (28 bp):
CAATCCTTAACTTCCTCGGAAGAGAAGT
Found at i:244541 original size:94 final size:94
Alignment explanation
Indices: 244340--244541 Score: 325
Period size: 94 Copynumber: 2.1 Consensus size: 94
244330 CTTCCTCATG
* * ** *
244340 AAGAGAAGTCAATATTTGTTATCCTTGACTCCCTTGTTTAGAGGAACCAATCATTGACTTCCTCG
1 AAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCGTAAAGAGGAACCAATCATTAACTTCCTCG
244405 GAAAGAGAAGTCAATCTTTTTTATTCCTA
66 GAAAGAGAAGTCAATCTTTTTTATTCCTA
*
244434 AAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCGTAAAGAGGAACCAATCCTTAACTTCCTCG
1 AAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCGTAAAGAGGAACCAATCATTAACTTCCTCG
244499 CG-AAGAGAAGTCAATCTTTTTTATTCCTA
66 -GAAAGAGAAGTCAATCTTTTTTATTCCTA
*
244528 AAGAGGAGTCAATC
1 AAGAGAAGTCAATC
244542 CTTGACTTCC
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 99 0.99
95 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (94 bp):
AAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCGTAAAGAGGAACCAATCATTAACTTCCTCG
GAAAGAGAAGTCAATCTTTTTTATTCCTA
Found at i:244560 original size:56 final size:56
Alignment explanation
Indices: 244470--244578 Score: 173
Period size: 56 Copynumber: 1.9 Consensus size: 56
244460 GACTCCCTCG
*
244470 TAAAGAGGAACCAATCCTTAACTTCCTCGCGAAGAGAAGTCAATCTTTTTTATTCC
1 TAAAGAGGAACCAATCCTTAACTTCCTCGCGAAGAGAAGTCAATCTTTGTTATTCC
** * *
244526 TAAAGAGGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTAT
1 TAAAGAGGAACCAATCCTTAACTTCCTCGCGAAGAGAAGTCAATCTTTGTTAT
244579 CCTTGACTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (56 bp):
TAAAGAGGAACCAATCCTTAACTTCCTCGCGAAGAGAAGTCAATCTTTGTTATTCC
Found at i:244581 original size:94 final size:94
Alignment explanation
Indices: 244483--244872 Score: 445
Period size: 94 Copynumber: 4.2 Consensus size: 94
244473 AGAGGAACCA
* * * *
244483 ATCCTTAACTTCCTCGCGAAGAGAAGTCAATCTTTTTTATTCCTAAAGAGGAGTCAATCCTTGAC
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGAC
244548 TTCCTCGTGAAGAGAAGTCAATCTTTGTT
66 TTCCTCGTGAAGAGAAGTCAATCTTTGTT
* *
244577 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGAC
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGAC
*
244642 TTCCTCGTGAAGAAAAGTCAATCTTTGTT
66 TTCCTCGTGAAGAGAAGTCAATCTTTGTT
* * *
244671 ATTCC-TGACTACCTCGTGAAGAGGAA-CCAATCCTTG--ACTTCCTAATGAAGAGAAGTCAATC
1 A-TCCTTGACTTCCTCGTGAAGA-GAAGTCAATCTTTGTTA-TTCCT-A--AAGAGAAGTCAATC
* * *
244732 TTTGTTA-TT--TC-TAAAGAGGAGTC-A-----G--
60 CTTG--ACTTCCTCGTGAAGAGAAGTCAATCTTTGTT
244757 -TCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGAC
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGAC
*
244821 TTCCTCGTGAAGATAAGTCAATCTTTGTT
66 TTCCTCGTGAAGAGAAGTCAATCTTTGTT
* *
244850 ATCCTTGACTCCCTCGTAAAGAG
1 ATCCTTGACTTCCTCGTGAAGAG
244873 GAACCAATCC
Statistics
Matches: 248, Mismatches: 23, Indels: 50
0.77 0.07 0.16
Matches are distributed among these distances:
81 1 0.00
82 2 0.01
83 17 0.07
84 8 0.03
85 34 0.14
86 6 0.02
87 1 0.00
88 1 0.00
91 1 0.00
92 1 0.00
93 6 0.02
94 143 0.58
95 8 0.03
96 16 0.06
97 2 0.01
98 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (94 bp):
ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCAATCCTTGAC
TTCCTCGTGAAGAGAAGTCAATCTTTGTT
Found at i:244590 original size:38 final size:38
Alignment explanation
Indices: 244539--244616 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
244529 AGAGGAGTCA
*
244539 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTT
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTT
244577 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTT
1 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTT
244615 AT
1 AT
244617 TCCTAAAGAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (38 bp):
ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTT
Found at i:244631 original size:27 final size:27
Alignment explanation
Indices: 244595--244676 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
244585 CTTCCTCATG
244595 AAGAGAAGTCAATCTTTGTTATTCCTA
1 AAGAGAAGTCAATCTTTGTTATTCCTA
* * ** * *
244622 AAGAGGAGTCAATCCTTGACTTCCTCGTG
1 AAGAGAAGTCAATCTTTG--TTATTCCTA
*
244651 AAGAAAAGTCAATCTTTGTTATTCCT
1 AAGAGAAGTCAATCTTTGTTATTCCT
244677 GACTACCTCG
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
27 21 0.51
29 20 0.49
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (27 bp):
AAGAGAAGTCAATCTTTGTTATTCCTA
Found at i:244662 original size:217 final size:215
Alignment explanation
Indices: 244273--244795 Score: 676
Period size: 217 Copynumber: 2.4 Consensus size: 215
244263 CTTCAACTTG
* * * * *
244273 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAAAAGAATCAATCATTGACTTCCTCA
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCG
* ** **
244338 TGAAGAGAAGTCAATATTTGTTATCCTTGACTCCCTTGTTTAGAGGAACCAATCATTGACTTCCT
66 TGAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATGAAGAGGAACCAATCATTGACTTCCT
** * * *
244403 CGGAAAGAGAAGTCAATCTTTTTTATTCCTAAAGAGAAGTCAATCTTTGTTA-TCCTTGACTCCC
131 --GAAAGAGAAGTCAATCTTACTTACTCCTAAAGAAAAGTCAATCTTTGTTATTCC-TGACTACC
244467 TCGTAAAGAGGAACCAATCCTTA
193 TCGTAAAGAGGAACCAATCCTTA
* *
244490 ACTTCCTCGCGAAGAGAAGTCAATCTTTTTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCG
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCG
* * *
244555 TGAAGAGAAGTCAATCTTTGTTATCCTTGACTTCCTCATGAAGA-GAAGTCAATCTTTGTTA-TT
66 TGAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATGAAGAGGAA-CCAATCATTG--ACTT
* * * *
244618 CCT-AAAGAGGAGTCAATCCTTGACTTCCTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGACTA
128 CCTGAAAGAGAAGTCAAT-CTT-ACTTACTCCTAAAGAAAAGTCAATCTTTGTTATTCCTGACTA
* *
244682 CCTCGTGAAGAGGAACCAATCCTTG
191 CCTCGTAAAGAGGAACCAATCCTTA
** * *
244707 ACTTCCTAATGAAGAGAAGTCAATCTTTGTTATTTCTAAAGAGGAGTCAGTCCTTGACTTCCTCG
1 ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCG
244772 TGAAGAGAAGTCAATCTTTGTTAT
66 TGAAGAGAAGTCAATCTTTGTTAT
244796 TCCTAAAGAG
Statistics
Matches: 268, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
215 13 0.05
216 6 0.02
217 240 0.90
218 8 0.03
219 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (215 bp):
ACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGACTTCCTCG
TGAAGAGAAGTCAATCTTTGTTATCCTTGACTCCCTCATGAAGAGGAACCAATCATTGACTTCCT
GAAAGAGAAGTCAATCTTACTTACTCCTAAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCG
TAAAGAGGAACCAATCCTTA
Found at i:244663 original size:56 final size:56
Alignment explanation
Indices: 244577--244851 Score: 361
Period size: 56 Copynumber: 4.7 Consensus size: 56
244567 AATCTTTGTT
*
244577 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCA
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCA
* **
244633 ATCCTTGACTTCCTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCGTGAAGAGGAAC
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT-C---CTA-------AAGAGGAGT
244698 CA
55 CA
** *
244700 ATCCTTGACTTCCTAATGAAGAGAAGTCAATCTTTGTTATTTCTAAAGAGGAGTCA
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCA
* *
244756 GTCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGAAGTCA
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCA
*
244812 ATCCTTGACTTCCTCGTGAAGATAAGTCAATCTTTGTTAT
1 ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTAT
244852 CCTTGACTCC
Statistics
Matches: 191, Mismatches: 17, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
56 137 0.72
57 1 0.01
60 3 0.02
63 3 0.02
67 47 0.25
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (56 bp):
ATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCA
Found at i:244704 original size:123 final size:123
Alignment explanation
Indices: 244577--244799 Score: 410
Period size: 123 Copynumber: 1.8 Consensus size: 123
244567 AATCTTTGTT
*
244577 ATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGAC
1 ATCCTTGACTTCCTAATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGAC
244642 TTCCTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCGTGAAGAGGAACCA
66 TTCCTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCGTGAAGAGGAACCA
* *
244700 ATCCTTGACTTCCTAATGAAGAGAAGTCAATCTTTGTTATTTCTAAAGAGGAGTCAGTCCTTGAC
1 ATCCTTGACTTCCTAATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGAC
*
244765 TTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCCT
66 TTCCTCGTGAAGAAAAGTCAATCTTTGTTATTCCT
244800 AAAGAGAAGT
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 96 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (123 bp):
ATCCTTGACTTCCTAATGAAGAGAAGTCAATCTTTGTTATTCCTAAAGAGGAGTCAATCCTTGAC
TTCCTCGTGAAGAAAAGTCAATCTTTGTTATTCCTGACTACCTCGTGAAGAGGAACCA
Found at i:244805 original size:27 final size:27
Alignment explanation
Indices: 244718--244851 Score: 106
Period size: 29 Copynumber: 4.8 Consensus size: 27
244708 CTTCCTAATG
*
244718 AAGAGAAGTCAATCTTTGTTATTTCTA
1 AAGAGAAGTCAATCTTTGTTATTCCTA
* * * ** * *
244745 AAGAGGAGTCAGTCCTTGACTTCCTCGTG
1 AAGAGAAGTCAATCTTTG--TTATTCCTA
244774 AAGAGAAGTCAATCTTTGTTATTCCTA
1 AAGAGAAGTCAATCTTTGTTATTCCTA
* ** * *
244801 AAGAGAAGTCAATCCTTGACTTCCTCGTG
1 AAGAGAAGTCAATCTTTG--TTATTCCTA
*
244830 AAGATAAGTCAATCTTTGTTAT
1 AAGAGAAGTCAATCTTTGTTAT
244852 CCTTGACTCC
Statistics
Matches: 79, Mismatches: 24, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
27 39 0.49
29 40 0.51
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (27 bp):
AAGAGAAGTCAATCTTTGTTATTCCTA
Found at i:245194 original size:82 final size:82
Alignment explanation
Indices: 244976--245168 Score: 305
Period size: 82 Copynumber: 2.4 Consensus size: 82
244966 CGAGTATGAT
* * *
244976 CTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAACATACTCGTA
1 CTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACTAGTA
*
245041 TTCCAAAGTTGATCTGA
66 TTCCAAAATTGATCTGA
* * * *
245058 CTACCCGAATAAGATGAACAGATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACTAGTC
1 CTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACTAGTA
245123 TTCCAAAATTGATCTGA
66 TTCCAAAATTGATCTGA
*
245140 CTACCCGAAAAAGAGGAACATTTCAAGTC
1 CTACCCGAAAAAGAGGAACATATCAAGTC
245169 CAATTTACCC
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 99 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (82 bp):
CTACCCGAAAAAGAGGAACATATCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACTAGTA
TTCCAAAATTGATCTGA
Found at i:245337 original size:3 final size:3
Alignment explanation
Indices: 245331--245428 Score: 110
Period size: 3 Copynumber: 33.3 Consensus size: 3
245321 TCGTAGTTAA
** * *
245331 TAT TAT TAT TAT TAT CCT TAT TAT TAT TAT TAT GA- TAT AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
245378 TAT TAT TAT TA- TAT AAT TAT TAT TAT TAC TAT TAT TAT TAT GAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
245425 TAT T
1 TAT T
245429 TACATTTTAC
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
2 3 0.04
3 75 0.96
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:245378 original size:23 final size:22
Alignment explanation
Indices: 245331--245428 Score: 110
Period size: 23 Copynumber: 4.5 Consensus size: 22
245321 TCGTAGTTAA
**
245331 TATTATTATTAT-TATCCTTAT
1 TATTATTATTATATATAATTAT
245352 TATTATTATTATGATATAATTAT
1 TATTATTATTAT-ATATAATTAT
245375 TATTATTATTATTATATAATTAT
1 TATTATTATTA-TATATAATTAT
* *
245398 TATTATTACTAT-TATTATTAT
1 TATTATTATTATATATAATTAT
* *
245419 GATAATTATT
1 TATTATTATT
245429 TACATTTTAC
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
21 27 0.40
22 1 0.01
23 38 0.57
24 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (22 bp):
TATTATTATTATATATAATTAT
Found at i:247820 original size:13 final size:15
Alignment explanation
Indices: 247802--247834 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
247792 GTATTGTTTT
247802 AATAAA-TTT-TTAA
1 AATAAATTTTATTAA
247815 AATAAATTTTATTAA
1 AATAAATTTTATTAA
247830 AATAA
1 AATAA
247835 CAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 3 0.17
15 9 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAAATTTTATTAA
Found at i:250855 original size:20 final size:18
Alignment explanation
Indices: 250820--250856 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
250810 AGATCCAAAC
250820 AAAAAAGAAAAAGAGAAT
1 AAAAAAGAAAAAGAGAAT
250838 AAAAGAAGAAAGAAGAGAA
1 AAAA-AAGAAA-AAGAGAA
250857 AATGAGACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 6 0.35
20 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (18 bp):
AAAAAAGAAAAAGAGAAT
Found at i:253060 original size:17 final size:19
Alignment explanation
Indices: 253014--253067 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
253004 TTTCGTGGTC
253014 CGTCGGAGAGAAGAAAAGT
1 CGTCGGAGAGAAGAAAAGT
*
253033 CGTCGGAGAGAAGAAAGGT
1 CGTCGGAGAGAAGAAAAGT
*
253052 CGTCGGAGAGAGGAAA
1 CGTCGGAGAGAAGAAA
253068 CGTTCAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.39, C:0.11, G:0.41, T:0.09
Consensus pattern (19 bp):
CGTCGGAGAGAAGAAAAGT
Found at i:257320 original size:25 final size:25
Alignment explanation
Indices: 257292--257343 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
257282 TTCATCCAAA
*
257292 ATTTCAGAGAACAATATCTTAGGGG
1 ATTTCAAAGAACAATATCTTAGGGG
* **
257317 ATTTTAAATTACAATATCTTAGGGG
1 ATTTCAAAGAACAATATCTTAGGGG
257342 AT
1 AT
257344 CTTAAATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (25 bp):
ATTTCAAAGAACAATATCTTAGGGG
Found at i:257348 original size:25 final size:25
Alignment explanation
Indices: 257302--257357 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
257292 ATTTCAGAGA
*
257302 ACAATATCTTAGGGGATTTTAAATT
1 ACAATATCTTAGGGGATCTTAAATT
257327 ACAATATCTTAGGGGATCTTAAATT
1 ACAATATCTTAGGGGATCTTAAATT
*
257352 AAAATA
1 ACAATA
257358 AACTCGAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (25 bp):
ACAATATCTTAGGGGATCTTAAATT
Found at i:258366 original size:134 final size:133
Alignment explanation
Indices: 258208--259146 Score: 1275
Period size: 134 Copynumber: 7.1 Consensus size: 133
258198 GTTTAATTTG
*
258208 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAGTCCCTCTTTTCCAAGATTTGATATTCCCT
1 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
*
258273 GAGTGACAGAGTAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAACA
66 GAGTGACAGAGGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAAC-
258338 TCCC
130 TCCC
* **
258342 CAGATCTGATATTCCCTTCAGAAGAAGCGTAACAGGTCCCTCTTTTCCAAGATTTGATATTCCCT
1 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
* * *
258407 GAGTGACAGCGGAACAAGTATGCCCCGATTCAATCTTCCCTGAGTGACAGCAGAATGGATCAACA
66 GAGTGACAGAGGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAAC-
258472 TCCC
130 TCCC
* * * *
258476 CAAATATGATATT-CCTTCTAGAAGAAGTGGAACAAATCCCTCTCTTCCAAGATTTGATATTCCC
1 CAGATCTGATATTCCCTTC-AGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCC
* * * * *
258540 TGAGTGACAGTGGAACAAATCTGCCCCGATTCAATCTTCCATGAGTGAAAGCGGAATGGATCAAT
65 TGAGTGACAGAGGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAAC
258605 TCCCC
130 T-CCC
* * * * *
258610 CAAATCTTATATTCCCTTCAGAAGAAGCGAAACATATCCCTTTTTTCCAAGATTTGATATTCCCT
1 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
* * *
258675 GAGTGACA-ACGGAACAAGTCTGCCCCGATTAAATCTTCCCTGAGTGACAACGGAATGTATCAAC
66 GAGTGACAGA-GGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAAC
258739 TCCC
130 TCCC
* *
258743 CAGATCTGATATTCCCTTCAGAAGAAGAGGAACAAATCTCTCTTTTCCAAGATTTGATATTCCCT
1 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
* * * *
258808 GAGTGACA-ACAGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAACAGAATGAATCAAC
66 GAGTGACAGA-GGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAAC
258872 TCCC
130 TCCC
* * *
258876 TCATATCTTATATTCCCTTCAGAAGAAGCGGAACAAATCCATCTTTTCCAAGATTTGATATTCCC
1 -CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCC
* *
258941 TGAGTGACA-ACGGAACAAGTCTACCCCGATTCAATCTTCCCTGAGTGATAGC--------T---
65 TGAGTGACAGA-GGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAA
258994 CT---
129 CTCCC
258996 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
1 CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
* * * * * *
259061 GGGTGACAGCGGAACAAGTCTGCCCTGATTCAATCTTCCCTAAGTTACAGCGGAATAGATCAACT
66 GAGTGACAGAGGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAACT
259126 CTCC
131 C-CC
* *
259130 TAAATCTGATATTCCCT
1 CAGATCTGATATTCCCT
259147 GAGTGACAGC
Statistics
Matches: 717, Mismatches: 67, Indels: 42
0.87 0.08 0.05
Matches are distributed among these distances:
119 105 0.15
123 2 0.00
126 1 0.00
127 1 0.00
130 2 0.00
133 131 0.18
134 470 0.66
135 5 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (133 bp):
CAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCCCT
GAGTGACAGAGGAACAAGTCTGCCCCGATTCAATCTTCCCTGAGTGACAGCGGAATGGATCAACT
CCC
Found at i:259096 original size:119 final size:119
Alignment explanation
Indices: 258875--259101 Score: 391
Period size: 119 Copynumber: 1.9 Consensus size: 119
258865 AATCAACTCC
* *
258875 CTCATATCTTATATTCCCTTCAGAAGAAGCGGAACAAATCCATCTTTTCCAAGATTTGATATTCC
1 CTCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCATCTTTTCCAAGATTTGATATTCC
258940 CTGAGTGACAACGGAACAAGTCTACCCCGATTCAATCTTCCCTGAGTGATAGCT
66 CTGAGTGACAACGGAACAAGTCTACCCCGATTCAATCTTCCCTGAGTGATAGCT
*
258994 CTCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCCTCTTTTCCAAGATTTGATATTCC
1 CTCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCATCTTTTCCAAGATTTGATATTCC
* * * *
259059 CTGGGTGACAGCGGAACAAGTCTGCCCTGATTCAATCTTCCCT
66 CTGAGTGACAACGGAACAAGTCTACCCCGATTCAATCTTCCCT
259102 AAGTTACAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 101 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (119 bp):
CTCAGATCTGATATTCCCTTCAGAAGAAGCGGAACAAATCCATCTTTTCCAAGATTTGATATTCC
CTGAGTGACAACGGAACAAGTCTACCCCGATTCAATCTTCCCTGAGTGATAGCT
Found at i:259298 original size:3 final size:3
Alignment explanation
Indices: 259292--259332 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
259282 TTTTTTTTCC
259292 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
259333 ATCAAATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:259883 original size:18 final size:20
Alignment explanation
Indices: 259862--259901 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
259852 AAAAGATCCA
259862 AACAAAA-AAGAAA-AAGAG
1 AACAAAAGAAGAAATAAGAG
259880 AACAAAAGAAGAAATAAGAG
1 AACAAAAGAAGAAATAAGAG
259900 AA
1 AA
259902 AAGGAGACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.75, C:0.05, G:0.17, T:0.03
Consensus pattern (20 bp):
AACAAAAGAAGAAATAAGAG
Found at i:262959 original size:13 final size:13
Alignment explanation
Indices: 262941--262970 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
262931 CAAAACACGT
262941 AAAAATAATAATA
1 AAAAATAATAATA
262954 AAAAATAATAATA
1 AAAAATAATAATA
262967 AAAA
1 AAAA
262971 TTAACAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAATAATAATA
Found at i:263201 original size:14 final size:13
Alignment explanation
Indices: 263182--263211 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
263172 TGATATTAAG
263182 AAAAAATAATAATA
1 AAAAAATAA-AATA
263196 AAAAAATAAAATA
1 AAAAAATAAAATA
263209 AAA
1 AAA
263212 TAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAAATAAAATA
Found at i:263250 original size:33 final size:33
Alignment explanation
Indices: 263182--263258 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
263172 TGATATTAAG
*
263182 AAAAA-ATAATA-ATAAAAAAATAAAATAAAAT
1 AAAAATATAATATATAAAAAAATAAAATAAAAC
* *
263213 AAAAATATAATATATATATAAAT-AAATAAAAAC
1 AAAAATATAATATATAAAAAAATAAAAT-AAAAC
*
263246 AAAAATAGAATAT
1 AAAAATATAATAT
263259 TAAGAATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 5 0.13
32 10 0.26
33 24 0.62
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.23
Consensus pattern (33 bp):
AAAAATATAATATATAAAAAAATAAAATAAAAC
Found at i:263286 original size:40 final size:42
Alignment explanation
Indices: 263224--263320 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 42
263214 AAAATATAAT
* *
263224 ATATATATAAATAAATAAAAAC-A-AAAATAGAATATTAAGA
1 ATATATATATATATATAAAAACAATAAAATAGAATATTAAGA
* *
263264 ATATATATATATATATATAAACATATAAAATATAATATTAAGA
1 ATATATATATATATATAAAAACA-ATAAAATAGAATATTAAGA
* *
263307 A-AAAAATATATATA
1 ATATATATATATATA
263321 CATAGTAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
40 19 0.40
42 12 0.25
43 17 0.35
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (42 bp):
ATATATATATATATATAAAAACAATAAAATAGAATATTAAGA
Found at i:263392 original size:14 final size:14
Alignment explanation
Indices: 263384--263435 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
263374 TATAAGATAT
263384 ATATAATAAAAATA
1 ATATAATAAAAATA
*
263398 ATATAATATAAATA
1 ATATAATAAAAATA
* *
263412 A-ATAAAAAAAAGGA
1 ATATAATAAAAA-TA
263426 ATATAATAAA
1 ATATAATAAA
263436 TAAAAAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 8 0.26
14 16 0.52
15 7 0.23
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (14 bp):
ATATAATAAAAATA
Found at i:263401 original size:25 final size:25
Alignment explanation
Indices: 263355--263419 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
263345 ACATCTATAC
* *
263355 ATATATAT-ATATATAATGATATAAG
1 ATATATATAATA-AAAATAATATAAG
*
263380 ATATATATAATAAAAATAATATAAT
1 ATATATATAATAAAAATAATATAAG
*
263405 ATAAATA-AATAAAAA
1 ATATATATAATAAAAA
263420 AAAGGAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.23
25 24 0.69
26 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (25 bp):
ATATATATAATAAAAATAATATAAG
Found at i:263406 original size:23 final size:21
Alignment explanation
Indices: 263388--263453 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 21
263378 AGATATATAT
263388 AATAAAAATAATATAATATAAATA
1 AATAAAAA-AATA-AATAT-AATA
263412 AATAAAAAAA-AGGAATATAATA
1 AATAAAAAAATA--AATATAATA
263434 AATAAAAAAATAAATATAAT
1 AATAAAAAAATAAATATAAT
263454 TAAAAATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
21 8 0.21
22 15 0.38
23 8 0.21
24 8 0.21
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (21 bp):
AATAAAAAAATAAATATAATA
Found at i:263442 original size:21 final size:22
Alignment explanation
Indices: 263380--263453 Score: 71
Period size: 21 Copynumber: 3.3 Consensus size: 22
263370 ATGATATAAG
* *
263380 ATAT-ATATAATAAAAATAATATA
1 ATATAATA-AATAAAAAAAAGA-A
*
263403 ATATAAATAAATAAAAAAAAGGA
1 ATAT-AATAAATAAAAAAAAGAA
*
263426 ATATAATAAAT-AAAAAAATAA
1 ATATAATAAATAAAAAAAAGAA
263447 ATATAAT
1 ATATAAT
263454 TAAAAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 15 0.34
22 7 0.16
23 9 0.20
24 10 0.23
25 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (22 bp):
ATATAATAAATAAAAAAAAGAA
Found at i:263452 original size:18 final size:18
Alignment explanation
Indices: 263388--263459 Score: 51
Period size: 17 Copynumber: 4.0 Consensus size: 18
263378 AGATATATAT
* *
263388 AATAAAAATAATATAATATA
1 AATAAATATAA-ATAA-AAA
*
263408 AATAAATA-AAA-AAAAGG
1 AATAAATATAAATAAAA-A
*
263425 AATATA-ATAAATAAAAA
1 AATAAATATAAATAAAAA
*
263442 AATAAATATAATTAAAAA
1 AATAAATATAAATAAAAA
263460 TATTTATATA
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 15 0.37
18 15 0.37
19 2 0.05
20 7 0.17
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
AATAAATATAAATAAAAA
Found at i:265713 original size:28 final size:28
Alignment explanation
Indices: 265673--265735 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
265663 AGTTTACAGA
*
265673 ATTTGAAGTTTATGATATAATTCATAGG
1 ATTTGGAGTTTATGATATAATTCATAGG
* *
265701 ATTTGGAGTTTATGATGTAATTTATAGG
1 ATTTGGAGTTTATGATATAATTCATAGG
*
265729 GTTTGGA
1 ATTTGGA
265736 TTAAATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (28 bp):
ATTTGGAGTTTATGATATAATTCATAGG
Found at i:266213 original size:16 final size:16
Alignment explanation
Indices: 266194--266224 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
266184 CGAAGTTGAA
*
266194 TCAATATCAAGTCAGT
1 TCAATAGCAAGTCAGT
266210 TCAATAGCAAGTCAG
1 TCAATAGCAAGTCAG
266225 ATCATTTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (16 bp):
TCAATAGCAAGTCAGT
Found at i:267142 original size:69 final size:69
Alignment explanation
Indices: 267061--267255 Score: 205
Period size: 69 Copynumber: 2.8 Consensus size: 69
267051 TACGATAATA
* * * *
267061 TGCTCCCTTGTGAGTCACTATAGTCCTTCGGAGCTCCCGTGCGAGTCAACCGAAATAATTACGAT
1 TGCTCCCTTGTGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCAAAATAATCACGAT
267126 TAGG
66 TAGG
* * * ** ** * *
267130 TGCT-CCTGTGTGAGTAACTCTATTCCTTCGGGGCTTTCGTGCGAGTCGCCCAGAATAATCATGA
1 TGCTCCCT-TGTGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCAAAATAATCACGA
267194 TTAGG
65 TTAGG
* * * *
267199 TGCTCCCTTGCGAGTCACTCTAATCCTTC-AAGGCTCCTGTGCGAGTCACCCAAAATA
1 TGCTCCCTTGTGAGTCACTCTAATCCTTCGGA-GCTCCCGTGCGAGTCAACCAAAATA
267256 CTCATTATTA
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
68 3 0.03
69 95 0.94
70 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.29
Consensus pattern (69 bp):
TGCTCCCTTGTGAGTCACTCTAATCCTTCGGAGCTCCCGTGCGAGTCAACCAAAATAATCACGAT
TAGG
Found at i:269055 original size:28 final size:28
Alignment explanation
Indices: 269015--269077 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
269005 AGTTTACAGA
*
269015 ATTTGAAGTTTATGATATAATTCATAGG
1 ATTTGGAGTTTATGATATAATTCATAGG
* *
269043 ATTTGGAGTTTATGATGTAATTTATAGG
1 ATTTGGAGTTTATGATATAATTCATAGG
*
269071 GTTTGGA
1 ATTTGGA
269078 TTAAATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (28 bp):
ATTTGGAGTTTATGATATAATTCATAGG
Found at i:271090 original size:69 final size:69
Alignment explanation
Indices: 270835--271090 Score: 282
Period size: 69 Copynumber: 3.7 Consensus size: 69
270825 TACGATAATA
* * * * * *
270835 TGCTCCCTTGTGATTCACTCTAATCCTTTGGAGCTCCCGTGCGAGTCAACCTA-AATAATTACGA
1 TGCTCCCGTGCGAGTCACTCTAATCCTTCGGGGCTCCCGTGCGAGTC-ACCCAGAATAATTACGA
270899 TTAGG
65 TTAGG
* * *
270904 TGCTCTCGTGCAAGTCACTCTAATCCTTCGGGGCTCCCGTGCAAGTCACCC-GAAATAATTACGA
1 TGCTCCCGTGCGAGTCACTCTAATCCTTCGGGGCTCCCGTGCGAGTCACCCAG-AATAATTACGA
270968 TTAGG
65 TTAGG
* * * * *** * *
270973 TGCTCCCGTGTGAGTCACTCTATTCATCCGGGGCTTTTGTGCGAGTCACCCAGAATAATCACAAT
1 TGCTCCCGTGCGAGTCACTCTAATCCTTCGGGGCTCCCGTGCGAGTCACCCAGAATAATTACGAT
271038 TAGG
66 TAGG
* ** *
271042 TGCTCCCTTGCGAGTCACTCTAATCCTTCAAGGCTCCTGTGCGAGTCAC
1 TGCTCCCGTGCGAGTCACTCTAATCCTTCGGGGCTCCCGTGCGAGTCAC
271091 TAAGAATACA
Statistics
Matches: 154, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
68 3 0.02
69 150 0.97
70 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (69 bp):
TGCTCCCGTGCGAGTCACTCTAATCCTTCGGGGCTCCCGTGCGAGTCACCCAGAATAATTACGAT
TAGG
Found at i:271350 original size:76 final size:75
Alignment explanation
Indices: 271229--271633 Score: 454
Period size: 76 Copynumber: 5.3 Consensus size: 75
271219 ACATTAACAT
* * *
271229 GTAATTCCAGCACTAAA-TTAAACACATCACAATTCTAGCAGTGAAATTTAACAATGACTTACAC
1 GTAATTCCAGCACTAAACTT-ATCACAT---ATTTC-AGCAGTGAAATTTAACATTGACTTACAC
* *
271293 CAGTGAAAT-CATGTC
61 CAGTGAAATGAAT-AC
* ** * *
271308 ATAATTTTAGCACTAAACTTATGACATGATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACAT-ATTTCAGCAGTGAAATTTAACATTGACTTACACCAGT
271373 GAAATGAATAC
65 GAAATGAATAC
* * * *
271384 GTAATTCAAGCACCAAATTTATCACATCATTTCAGCAGTGAAATTTAACATTGACTTACACCAAT
1 GTAATTCCAGCACTAAACTTATCACAT-ATTTCAGCAGTGAAATTTAACATTGACTTACACCAGT
*
271449 AAAATGAATAC
65 GAAATGAATAC
* * * * *
271460 GTAATTCCAGCGCTAAACTTATCACATAATTCCAGTAGTGAAACTTAACATTGACTTAAACCAGT
1 GTAATTCCAGCACTAAACTTATCACAT-ATTTCAGCAGTGAAATTTAACATTGACTTACACCAGT
*
271525 GAAATGAATAT
65 GAAATGAATAC
* ** * * *
271536 GTAATTCCAGCACTAAACTTTTCACATAAGTCAAGGAGTGAAATTAAACATTGACTTACACTAGT
1 GTAATTCCAGCACTAAACTTATCACATATTTC-AGCAGTGAAATTTAACATTGACTTACACCAGT
271601 GAAATGAATAC
65 GAAATGAATAC
*
271612 GTAATTCCAACACTAAACTTAT
1 GTAATTCCAGCACTAAACTTAT
271634 GATTTCACAT
Statistics
Matches: 277, Mismatches: 46, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
75 2 0.01
76 248 0.90
77 6 0.02
79 19 0.07
80 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (75 bp):
GTAATTCCAGCACTAAACTTATCACATATTTCAGCAGTGAAATTTAACATTGACTTACACCAGTG
AAATGAATAC
Found at i:271441 original size:152 final size:153
Alignment explanation
Indices: 271229--271633 Score: 503
Period size: 152 Copynumber: 2.6 Consensus size: 153
271219 ACATTAACAT
* * * *
271229 GTAATTCCAGCACTAAATTAAACACATCACAATTCTAGCAGTGAAATTTAACAATGACTTACACC
1 GTAATTCCAGCACTAAATTTATCACAT--CAATTCAAGCAGTGAAATTTAACATTGACTTACACC
* * ** * * *
271294 AGTGAAAT-CATGTCATAATTTTAGCACTAAACTTATGACATGATTTCAGCAGTGAAACTTAACA
64 AGTGAAATGAAT-ACATAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACA
*
271358 TTGACTTACACCAGTGAAATGAATAC
128 TTGACTTAAACCAGTGAAATGAATAC
* * * *
271384 GTAATTCAAGCACCAAATTTATCACATCATTTC-AGCAGTGAAATTTAACATTGACTTACACCAA
1 GTAATTCCAGCACTAAATTTATCACATCAATTCAAGCAGTGAAATTTAACATTGACTTACACCAG
* * * *
271448 TAAAATGAATACGTAATTCCAGCGCTAAACTTATCACATAATTCCAGTAGTGAAACTTAACATTG
66 TGAAATGAATACATAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATTG
*
271513 ACTTAAACCAGTGAAATGAATAT
131 ACTTAAACCAGTGAAATGAATAC
* * * *
271536 GTAATTCCAGCACTAAACTTT-TCACAT-AAGTCAAGGAGTGAAATTAAACATTGACTTACACTA
1 GTAATTCCAGCACTAAA-TTTATCACATCAATTCAAGCAGTGAAATTTAACATTGACTTACACCA
* *
271599 GTGAAATGAATACGTAATTCCAACACTAAACTTAT
65 GTGAAATGAATACATAATTCCAGCACTAAACTTAT
271634 GATTTCACAT
Statistics
Matches: 216, Mismatches: 31, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
151 3 0.01
152 180 0.83
153 10 0.05
155 23 0.11
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (153 bp):
GTAATTCCAGCACTAAATTTATCACATCAATTCAAGCAGTGAAATTTAACATTGACTTACACCAG
TGAAATGAATACATAATTCCAGCACTAAACTTATCACATAATTCCAGCAGTGAAACTTAACATTG
ACTTAAACCAGTGAAATGAATAC
Found at i:274983 original size:28 final size:28
Alignment explanation
Indices: 274943--275005 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
274933 AGTTTACAGA
*
274943 ATTTGAAGTTTATGATATAATTCATAGG
1 ATTTGGAGTTTATGATATAATTCATAGG
* *
274971 ATTTGGAGTTTATGATGTAATTTATAGG
1 ATTTGGAGTTTATGATATAATTCATAGG
*
274999 GTTTGGA
1 ATTTGGA
275006 TTAAATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (28 bp):
ATTTGGAGTTTATGATATAATTCATAGG
Found at i:275480 original size:16 final size:16
Alignment explanation
Indices: 275461--275491 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
275451 CGAAGTTGAG
*
275461 TCAATATCAAGTCAGT
1 TCAATAGCAAGTCAGT
275477 TCAATAGCAAGTCAG
1 TCAATAGCAAGTCAG
275492 ATCATTTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (16 bp):
TCAATAGCAAGTCAGT
Found at i:276418 original size:69 final size:69
Alignment explanation
Indices: 276335--276539 Score: 191
Period size: 69 Copynumber: 3.0 Consensus size: 69
276325 TACGATAATA
* * *
276335 TGCTCCCTTGTGAGTCACTATAGTCTTTCGGAGCTCCCGTGCGAGTCAACC-GAAATAATTATGA
1 TGCTCCCTTGTGAGTCACTATAGTCCTTCGGAGCTCCCGTGCGAGTCACCCAG-AATAATCATGA
276399 TTAGG
65 TTAGG
* * * * ** *
276404 TGCT-CCTGTGTGAGTAACTCTATTCCTTCGGGGCTTTCGTGCGAGTCGCCCAGAATAATCATGA
1 TGCTCCCT-TGTGAGTCACTATAGTCCTTCGGAGCTCCCGTGCGAGTCACCCAGAATAATCATGA
276468 TTAGG
65 TTAGG
* * * * * * * * *
276473 TGCTCCCTTGCGAGTCACTCTAATCCTTC-AAGGCTCCTGTGTGAGTCACCCAAAATACTCATTA
1 TGCTCCCTTGTGAGTCACTATAGTCCTTCGGA-GCTCCCGTGCGAGTCACCCAGAATAATCATGA
276537 TTA
65 TTA
276540 CATATATTTG
Statistics
Matches: 109, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
68 3 0.03
69 102 0.94
70 4 0.04
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.31
Consensus pattern (69 bp):
TGCTCCCTTGTGAGTCACTATAGTCCTTCGGAGCTCCCGTGCGAGTCACCCAGAATAATCATGAT
TAGG
Found at i:276785 original size:76 final size:76
Alignment explanation
Indices: 276690--277105 Score: 532
Period size: 76 Copynumber: 5.5 Consensus size: 76
276680 AACACATCAC
* * * * *
276690 AATTCTAGCAGTGAAACTTAACATTGACTTGCACCATTGAAATGAATACGTAATTCTAGCACTAA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
*
276755 ACTTATAACAT
66 ACTTATCACAT
* * * *
276766 GATTTCAACAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATT-CAAGCACCA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAA-CACTA
276830 AACTTATCACAT
65 AACTTATCACAT
* * * * * **
276842 CATTACAGCAGTGAAATTTAACATTGACTTACACCAGTAAAAT-ATATACGTAATTCTAACGTTA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGA-ATACGTAATTCCAACACTA
276906 AACTTATCACAT
65 AACTTATCACAT
* * *
276918 AATTCCAGTAGTGAAACTTAACATTAACTTACACCAACT-AAATGAATACGTAATTCCAACACTA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACC-AGTGAAATGAATACGTAATTCCAACACTA
*
276982 AACTTATTACAT
65 AACTTATCACAT
* ** *
276994 AATTCCAACAGTGAAACTTAACATTGACAAACACCAGTGAAATGAATACATAATTCCAACACTAA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
*
277059 ACTTATCACCT
66 ACTTATCACAT
* *
277070 AATTCCAGCAATGAAATTTAACATTGACTTACACCA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCA
277106 ATTCAAACTC
Statistics
Matches: 291, Mismatches: 43, Indels: 12
0.84 0.12 0.03
Matches are distributed among these distances:
75 4 0.01
76 282 0.97
77 5 0.02
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (76 bp):
AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
ACTTATCACAT
Found at i:276982 original size:24 final size:25
Alignment explanation
Indices: 276954--277003 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
276944 ACTTACACCA
*
276954 ACTAAA-TGAATACGTAATTCCAAC
1 ACTAAACTGAATACATAATTCCAAC
* *
276978 ACTAAACTTATTACATAATTCCAAC
1 ACTAAACTGAATACATAATTCCAAC
277003 A
1 A
277004 GTGAAACTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (25 bp):
ACTAAACTGAATACATAATTCCAAC
Found at i:277096 original size:228 final size:228
Alignment explanation
Indices: 276690--277105 Score: 638
Period size: 228 Copynumber: 1.8 Consensus size: 228
276680 AACACATCAC
* * * * * *
276690 AATTCTAGCAGTGAAACTTAACATTGACTTGCACCATTGAAATGAATACGTAATTCTAGCACTAA
1 AATTCCAGCAGTGAAACTTAACATTAACTTACACCACTGAAATGAATACGTAATTCCAACACTAA
* * ** *
276755 ACTTATAACATGATTTCAACAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAAT
66 ACTTATAACATAATTCCAACAGTGAAACTTAACATTGACAAACACCAGTGAAATGAATACATAAT
* *
276820 TCAAGCACCAAACTTATCACATCATTACAGCAGTGAAATTTAACATTGACTTACACCAGTAAAAT
131 TCAAGCACCAAACTTATCACATAATTACAGCAATGAAATTTAACATTGACTTACACCAGTAAAAT
276885 ATATACGTAATTCTAACGTTAAACTTATCACAT
196 ATATACGTAATTCTAACGTTAAACTTATCACAT
*
276918 AATTCCAGTAGTGAAACTTAACATTAACTTACACCAACT-AAATGAATACGTAATTCCAACACTA
1 AATTCCAGCAGTGAAACTTAACATTAACTTACACC-ACTGAAATGAATACGTAATTCCAACACTA
*
276982 AACTTATTACATAATTCCAACAGTGAAACTTAACATTGACAAACACCAGTGAAATGAATACATAA
65 AACTTATAACATAATTCCAACAGTGAAACTTAACATTGACAAACACCAGTGAAATGAATACATAA
* * *
277047 TTCCAA-CACTAAACTTATCACCTAATTCCAGCAATGAAATTTAACATTGACTTACACCA
130 TT-CAAGCACCAAACTTATCACATAATTACAGCAATGAAATTTAACATTGACTTACACCA
277106 ATTCAAACTC
Statistics
Matches: 168, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
228 163 0.97
229 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (228 bp):
AATTCCAGCAGTGAAACTTAACATTAACTTACACCACTGAAATGAATACGTAATTCCAACACTAA
ACTTATAACATAATTCCAACAGTGAAACTTAACATTGACAAACACCAGTGAAATGAATACATAAT
TCAAGCACCAAACTTATCACATAATTACAGCAATGAAATTTAACATTGACTTACACCAGTAAAAT
ATATACGTAATTCTAACGTTAAACTTATCACAT
Found at i:278043 original size:26 final size:26
Alignment explanation
Indices: 278012--278117 Score: 73
Period size: 26 Copynumber: 4.2 Consensus size: 26
278002 ACAATTCTAG
278012 CAGTGAAACTTAACATTGACTTACAC
1 CAGTGAAACTTAACATTGACTTACAC
* * *
278038 CAGTGAAA-TGAATATGTAACTCTAGCA-
1 CAGTGAAACTTAACAT-TGACT-TA-CAC
* *
278065 C--T-AAACTTATGACA-TGA-TTTCAG
1 CAGTGAAACTTA--ACATTGACTTACAC
278088 CAGTGAAACTTAACATTGACTTACAC
1 CAGTGAAACTTAACATTGACTTACAC
278114 CAGT
1 CAGT
278118 TAATTGAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 24
0.64 0.10 0.26
Matches are distributed among these distances:
22 2 0.03
23 2 0.03
24 7 0.12
25 14 0.24
26 27 0.46
27 5 0.08
28 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (26 bp):
CAGTGAAACTTAACATTGACTTACAC
Found at i:278101 original size:76 final size:76
Alignment explanation
Indices: 278004--278416 Score: 522
Period size: 76 Copynumber: 5.4 Consensus size: 76
277994 AACACATCAC
* * * * *
278004 AATTCTAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATATGTAACTCTAGCACTAA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
*
278069 ACTTATGACAT
66 ACTTATCACAT
* * * * * *
278080 GATTTCAGCAGTGAAACTTAACATTGACTTACACCAGTTAATTGAATATGTAATT-CAAGCACCA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAA-CACTA
278144 AACTTATCACAT
65 AACTTATCACAT
* * * * * * *
278156 CATTTCAGCAATGAAATTTAACATTGACTTGCACCAATAAAATGAATACGTAATTCCAACACTAA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
278221 ACTTATCACAT
66 ACTTATCACAT
* * ** *
278232 AATTCCAGTAGTGAAACTTAACATTAACTTACACCAACGAAAGGAATACGTAATTCCAACACTAA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
278297 ACTTATCACAT
66 ACTTATCACAT
** *
278308 AATTCCAATAGTGAAACTTAAAATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
* *
278373 ACATATCACCT
66 ACTTATCACAT
* * *
278384 AATTCCAACAATGAAATTTAACATTGACTTACA
1 AATTCCAGCAGTGAAACTTAACATTGACTTACA
278417 TCAATTCAAA
Statistics
Matches: 294, Mismatches: 41, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
75 1 0.00
76 290 0.99
77 3 0.01
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (76 bp):
AATTCCAGCAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAA
ACTTATCACAT
Found at i:278234 original size:25 final size:24
Alignment explanation
Indices: 278201--278315 Score: 70
Period size: 25 Copynumber: 4.6 Consensus size: 24
278191 AATAAAATGA
*
278201 ATACGTAATTCCAACACTAAACTT
1 ATACATAATTCCAACACTAAACTT
** *
278225 ATCACATAATTCCAGTAGTGAAACTT
1 AT-ACATAATTCCAACACT-AAACTT
* * * ***
278251 A-ACATTAACTTACACCAACGAAAGGA
1 ATACA-TAA-TTCCAAC-ACTAAACTT
*
278277 ATACGTAATTCCAACACTAAACTT
1 ATACATAATTCCAACACTAAACTT
278301 ATCACATAATTCCAA
1 AT-ACATAATTCCAA
278316 TAGTGAAACT
Statistics
Matches: 64, Mismatches: 20, Indels: 13
0.66 0.21 0.13
Matches are distributed among these distances:
24 12 0.19
25 31 0.48
26 18 0.28
27 3 0.05
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.26
Consensus pattern (24 bp):
ATACATAATTCCAACACTAAACTT
Found at i:279395 original size:76 final size:76
Alignment explanation
Indices: 279298--279589 Score: 372
Period size: 76 Copynumber: 3.8 Consensus size: 76
279288 ATTTCTAATT
* * * * * *
279298 GTGAAACTTAACATTGGCTTACACCAGTGAAATGAATATGTAATTCTAGCACTAAACTTATGACA
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCACA
*
279363 TGATTTCAGCA
66 TAATTTCAGCA
* * *
279374 GTGAAACTTAACATTGACTTACACCAATGTATTGAATACGTAATT-CAAGCACCAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAA-CACTAAACTTATCAC
*
279438 ATCATTTCAGCA
65 ATAATTTCAGCA
* * * *
279450 ATGAAATTTAACATTGACTTACACCAGTAAAATGAATACGTAATTCCAACGAC-AAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAAC-ACTAAACTTATCAC
*
279514 ATAATTTCAGTA
65 ATAATTTCAGCA
* * * *
279526 TTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCAC
279590 TAACTTACAC
Statistics
Matches: 187, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
75 3 0.02
76 179 0.96
77 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (76 bp):
GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCACA
TAATTTCAGCA
Found at i:279625 original size:126 final size:126
Alignment explanation
Indices: 279479--279715 Score: 341
Period size: 126 Copynumber: 1.9 Consensus size: 126
279469 TACACCAGTA
* ** * *
279479 AAATGAATACGTAATTCCAACGAC-AAACTTATCACATAATTTCAGTATTGAAACTTAACATTAA
1 AAATGAATACGTAATTCCAAC-ACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAA
* * *
279543 CTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
65 CTTACACCAACAAAATGAATACGTAATTCCAACACTAAACTAATCACTAACTTACACCAACG
* *
279605 AAATGAATACGTAATTCCAACACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTGAT
1 AAATGAATACGTAATTCCAACACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAAC
** *
279670 TTACACCAGTAAAATGAATACGTAATTCCAGCACTAAACTAATCAC
66 TTACACCAACAAAATGAATACGTAATTCCAACACTAAACTAATCAC
279716 CTAATTCCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
125 2 0.02
126 95 0.98
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.27
Consensus pattern (126 bp):
AAATGAATACGTAATTCCAACACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAAC
TTACACCAACAAAATGAATACGTAATTCCAACACTAAACTAATCACTAACTTACACCAACG
Found at i:279636 original size:50 final size:50
Alignment explanation
Indices: 279529--279639 Score: 195
Period size: 50 Copynumber: 2.2 Consensus size: 50
279519 TTCAGTATTG
* * *
279529 AAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
279579 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
279629 AAACTTATCAC
1 AAACTTATCAC
279640 ATAATTCCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.25
Consensus pattern (50 bp):
AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
Found at i:279645 original size:25 final size:24
Alignment explanation
Indices: 279566--279661 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 24
279556 AATGAATATG
279566 TAATTCCAACACTAAACTTATCAC
1 TAATTCCAACACTAAACTTATCAC
* * * *
279590 TAACTTACACCAACGAAA-TGAAT-AC
1 TAA-TTCCAAC-ACTAAACT-TATCAC
279615 GTAATTCCAACACTAAACTTATCAC
1 -TAATTCCAACACTAAACTTATCAC
*
279640 ATAATTCCAACAGTGAAACTTA
1 -TAATTCCAACACT-AAACTTA
279662 AAATTGATTT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
24 10 0.18
25 28 0.51
26 17 0.31
ACGTcount: A:0.44, C:0.25, G:0.05, T:0.26
Consensus pattern (24 bp):
TAATTCCAACACTAAACTTATCAC
Found at i:279659 original size:76 final size:76
Alignment explanation
Indices: 279566--279754 Score: 245
Period size: 76 Copynumber: 2.5 Consensus size: 76
279556 AATGAATATG
* * *
279566 TAATTCCAACACT-AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
1 TAATTCCAACACTGAAACTTAACATTAACTTACACCAACAAAATGAATACGTAATTCCAACACTA
*
279630 AACTTATCACA
66 AACTAATCACA
* * * * ** *
279641 TAATTCCAACAGTGAAACTTAAAATTGATTTACACCAGTAAAATGAATACGTAATTCCAGCACTA
1 TAATTCCAACACTGAAACTTAACATTAACTTACACCAACAAAATGAATACGTAATTCCAACACTA
*
279706 AACTAATCACC
66 AACTAATCACA
* *
279717 TAATTCCAACATTGAAATTTAACATTAACTTACACCAA
1 TAATTCCAACACTGAAACTTAACATTAACTTACACCAA
279755 TTCAAACTCG
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
75 12 0.13
76 83 0.87
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (76 bp):
TAATTCCAACACTGAAACTTAACATTAACTTACACCAACAAAATGAATACGTAATTCCAACACTA
AACTAATCACA
Found at i:279676 original size:202 final size:202
Alignment explanation
Indices: 279390--279754 Score: 536
Period size: 202 Copynumber: 1.8 Consensus size: 202
279380 CTTAACATTG
* * * * * *
279390 ACTTACACCAATGTATTGAATACGTAATTCAAGCACCAAACTTATCACATCATTTCAGCAATGAA
1 ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
* * *
279455 ATTTAACATTGACTTACACCAGTAAAATGAATACGTAATTCCAACGAC-AAACTTATCACATAAT
66 ACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATTCCAAC-ACTAAACTAATCACATAAT
* **
279519 TTCAGTATTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
130 TCCAACATTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
279584 TATCACTA
195 TATCACTA
* *
279592 ACTTACACCAACGAAATGAATACGTAATTCCAA-CACTAAACTTATCACATAATTCCAACAGTGA
1 ACTTACACCAACGAAATGAATACGTAATT-CAAGCACCAAACTTATCACATAATTCCAACAATGA
* * *
279656 AACTTAAAATTGATTTACACCAGTAAAATGAATACGTAATTCCAGCACTAAACTAATCACCTAAT
65 AACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATTCCAACACTAAACTAATCACATAAT
*
279721 TCCAACATTGAAATTTAACATTAACTTACACCAA
130 TCCAACATTGAAACTTAACATTAACTTACACCAA
279755 TTCAAACTCG
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
201 2 0.01
202 138 0.97
203 3 0.02
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (202 bp):
ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
ACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATTCCAACACTAAACTAATCACATAATT
CCAACATTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTT
ATCACTA
Found at i:280398 original size:69 final size:69
Alignment explanation
Indices: 280335--280523 Score: 204
Period size: 69 Copynumber: 2.7 Consensus size: 69
280325 TACGATAATA
*
280335 TGCTCCCTTGTGAGTCACTCTAATCCTTC-GGATCTCCCGTGCGAGTTAACCAAAATAATTACGA
1 TGCTCCCTTGTGAGTCACTCTAATCCTTCGGGA-CTCCCGTGCGAGTCAACCAAAATAATTACGA
280399 TTAGG
65 TTAGG
* * ** * *** *
280404 TGCT-CCTGTGTGAGTCACTCTATTCTTTCGGGACTTTCGTGCGAGTCACCCAGCTTAATCACGA
1 TGCTCCCT-TGTGAGTCACTCTAATCCTTCGGGACTCCCGTGCGAGTCAACCAAAATAATTACGA
280468 TTAGG
65 TTAGG
* * * *
280473 TGCTCCCTTGCGAGTCACTCTAATCCATCAAGG-CTCCTGTGCGAGTCAACC
1 TGCTCCCTTGTGAGTCACTCTAATCCTTC-GGGACTCCCGTGCGAGTCAACC
280524 GGAATACTCA
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
68 3 0.03
69 86 0.89
70 8 0.08
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.30
Consensus pattern (69 bp):
TGCTCCCTTGTGAGTCACTCTAATCCTTCGGGACTCCCGTGCGAGTCAACCAAAATAATTACGAT
TAGG
Found at i:280786 original size:76 final size:76
Alignment explanation
Indices: 280700--280991 Score: 363
Period size: 76 Copynumber: 3.8 Consensus size: 76
280690 AATTCTCACT
* * * * * * * *
280700 GTGAACCTTAACAGTGGCTTACACCAGTGAAATGAATATGTAATTCTAGCACTAAACTTATGACA
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCACA
*
280765 TGATTTCAGTA
66 TAATTTCAGTA
* * *
280776 GTGAAACTTAACATTGACTTACACCAATGTATTGAATACGTAATT-CAAGCACCAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAA-CACTAAACTTATCAC
* *
280840 ATCATTTCAGCA
65 ATAATTTCAGTA
* * * *
280852 ATGAAATTTAACATTGACTTACACCAGTAAAATGAATACGTAATTCCAACGA-TAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAAC-ACTAAACTTATCAC
280916 ATAATTTCAGTA
65 ATAATTTCAGTA
* * *
280928 GTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCAC
280992 TAACTTACAC
Statistics
Matches: 183, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
75 2 0.01
76 177 0.97
77 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (76 bp):
GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCACA
TAATTTCAGTA
Found at i:280985 original size:152 final size:152
Alignment explanation
Indices: 280707--280991 Score: 412
Period size: 152 Copynumber: 1.9 Consensus size: 152
280697 ACTGTGAACC
* * * * * * *
280707 TTAACAGTGGCTTACACCAGTGAAATGAATATGTAATTCTAGCACTAAACTTATGACATGATTTC
1 TTAACAGTGACTTACACCAGTAAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTC
* * * *
280772 AGTAGTGAAACTTAACATTGACTTACACCAATGTATTGAATACGTAATTCAAGCACCAAACTTAT
66 AGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTAT
280837 CACATCATTTCAGCAATGAAAT
131 CACATCATTTCAGCAATGAAAT
*
280859 TTAACATTGACTTACACCAGTAAAATGAATACGTAATTCCAACGA-TAAACTTATCACATAATTT
1 TTAACAGTGACTTACACCAGTAAAATGAATACGTAATTCCAAC-ACTAAACTTATCACATAATTT
* *
280923 CAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAA-CACTAAACTT
65 CAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATT-CAAGCACCAAACTT
280987 ATCAC
129 ATCAC
280992 TAACTTACAC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
152 113 0.97
153 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.29
Consensus pattern (152 bp):
TTAACAGTGACTTACACCAGTAAAATGAATACGTAATTCCAACACTAAACTTATCACATAATTTC
AGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTAT
CACATCATTTCAGCAATGAAAT
Found at i:281038 original size:50 final size:50
Alignment explanation
Indices: 280931--281041 Score: 195
Period size: 50 Copynumber: 2.2 Consensus size: 50
280921 TTCAGTAGTG
* * *
280931 AAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
280981 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
281031 AAACTTATCAC
1 AAACTTATCAC
281042 ATAATTCCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.25
Consensus pattern (50 bp):
AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
Found at i:281047 original size:25 final size:24
Alignment explanation
Indices: 280968--281051 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
280958 AATGAATATG
280968 TAATTCCAACACTAAACTTATCAC
1 TAATTCCAACACTAAACTTATCAC
* * * *
280992 TAACTTACACCAACGAAA-TGAAT-AC
1 TAA-TTCCAAC-ACTAAACT-TATCAC
281017 GTAATTCCAACACTAAACTTATCAC
1 -TAATTCCAACACTAAACTTATCAC
281042 ATAATTCCAA
1 -TAATTCCAA
281052 TAGTGAAACT
Statistics
Matches: 45, Mismatches: 9, Indels: 11
0.69 0.14 0.17
Matches are distributed among these distances:
24 10 0.22
25 25 0.56
26 10 0.22
ACGTcount: A:0.44, C:0.26, G:0.04, T:0.26
Consensus pattern (24 bp):
TAATTCCAACACTAAACTTATCAC
Found at i:281061 original size:76 final size:76
Alignment explanation
Indices: 280968--281156 Score: 245
Period size: 76 Copynumber: 2.5 Consensus size: 76
280958 AATGAATATG
* * * *
280968 TAATTCCAACACT-AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACATAATTCCAACACTA
281032 AACTTATCACA
66 AACTTATCACA
* * * * ** * *
281043 TAATTCCAATAGTGAAACTTAAAATTGACTTACACCAGTGAAATGCATACATAATTCCAGCACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACATAATTCCAACACTA
*
281108 AACTTATCACC
66 AACTTATCACA
*
281119 TAATTCCAACAATGAAATTTAACATTAACTTACACCAA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAA
281157 TTCAAACTCG
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
75 11 0.12
76 84 0.88
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.27
Consensus pattern (76 bp):
TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACATAATTCCAACACTA
AACTTATCACA
Found at i:281063 original size:152 final size:152
Alignment explanation
Indices: 280752--281051 Score: 322
Period size: 152 Copynumber: 2.0 Consensus size: 152
280742 ATTCTAGCAC
* * * * * *
280752 TAAACTTATGACATGATTTCAGTAGTGAAACTTAACATTGACTTACACCAATGTATTGAATACGT
1 TAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATACGT
* * * * ** * * * *
280817 AATTCAAGCACCAAACTTATCACATCATTTCAGCAATGAAATTTAACATTGACTTACACCAGTAA
66 AATTCAAGCACCAAACTTATCACAACATTACACCAACGAAATGAAACAGTGAATTACAACACTAA
* *
280882 AATGAATACGTAATTCCAACGA
131 AATGAATACATAATTCCAAAGA
*
280904 TAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATATGT
1 TAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATACGT
* *
280969 AATTCCAA-CACTAAACTTATCACTAAC-TTACACCAACGAAATGAATAC-GT-AATTCCAACAC
66 AATT-CAAGCACCAAACTTATCAC-AACATTACACCAACGAAATGAA-ACAGTGAATTACAACAC
* *
281030 TAAACT-TATCACATAATTCCAA
128 TAAAATGAAT-ACATAATTCCAA
281052 TAGTGAAACT
Statistics
Matches: 122, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
150 2 0.02
151 23 0.19
152 90 0.74
153 7 0.06
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (152 bp):
TAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATACGT
AATTCAAGCACCAAACTTATCACAACATTACACCAACGAAATGAAACAGTGAATTACAACACTAA
AATGAATACATAATTCCAAAGA
Found at i:281072 original size:202 final size:202
Alignment explanation
Indices: 280792--281156 Score: 509
Period size: 202 Copynumber: 1.8 Consensus size: 202
280782 CTTAACATTG
* * * * * *
280792 ACTTACACCAATGTATTGAATACGTAATTCAAGCACCAAACTTATCACATCATTTCAGCAATGAA
1 ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
* * *
280857 ATTTAACATTGACTTACACCAGTAAAATGAATACGTAATTCCAACGA-TAAACTTATCACATAAT
66 ACTTAAAATTGACTTACACCAGTAAAATGAATACATAATTCCAAC-ACTAAACTTATCACATAAT
* ** *
280921 TTCAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
130 TCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
280986 TATCACTA
195 TATCACTA
* * *
280994 ACTTACACCAACGAAATGAATACGTAATTCCAA-CACTAAACTTATCACATAATTCCAATAGTGA
1 ACTTACACCAACGAAATGAATACGTAATT-CAAGCACCAAACTTATCACATAATTCCAACAATGA
* * * *
281058 AACTTAAAATTGACTTACACCAGTGAAATGCATACATAATTCCAGCACTAAACTTATCACCTAAT
65 AACTTAAAATTGACTTACACCAGTAAAATGAATACATAATTCCAACACTAAACTTATCACATAAT
*
281123 TCCAACAATGAAATTTAACATTAACTTACACCAA
130 TCCAACAATGAAACTTAACATTAACTTACACCAA
281157 TTCAAACTCG
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
201 1 0.01
202 136 0.97
203 3 0.02
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (202 bp):
ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
ACTTAAAATTGACTTACACCAGTAAAATGAATACATAATTCCAACACTAAACTTATCACATAATT
CCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTT
ATCACTA
Found at i:281098 original size:126 final size:126
Alignment explanation
Indices: 280881--281117 Score: 368
Period size: 126 Copynumber: 1.9 Consensus size: 126
280871 TACACCAGTA
* * *
280881 AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAAC
1 AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTCCAATAGTGAAACTTAAAATTAAC
**
280946 TTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
66 TTACACCAACGAAATGAATACATAATTCCAACACTAAACTTATCACTAACTTACACCAACG
*
281007 AAATGAATACGTAATTCCAAC-ACTAAACTTATCACATAATTCCAATAGTGAAACTTAAAATTGA
1 AAATGAATACGTAATTCCAACGA-TAAACTTATCACATAATTCCAATAGTGAAACTTAAAATTAA
** * *
281071 CTTACACCAGTGAAATGCATACATAATTCCAGCACTAAACTTATCAC
65 CTTACACCAACGAAATGAATACATAATTCCAACACTAAACTTATCAC
281118 CTAATTCCAA
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
125 1 0.01
126 99 0.99
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (126 bp):
AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTCCAATAGTGAAACTTAAAATTAAC
TTACACCAACGAAATGAATACATAATTCCAACACTAAACTTATCACTAACTTACACCAACG
Found at i:281828 original size:69 final size:69
Alignment explanation
Indices: 281738--281926 Score: 188
Period size: 69 Copynumber: 2.7 Consensus size: 69
281728 TACGATAATA
* *
281738 TGCTCCCTTGTGAGTCACTCTAATCCTTC-GGATCTCCCGTGCGAGTTAACCGA-AATAATTACA
1 TGCTCCCTTGTGAGTCACTCTAATCCTTCGGGA-CTCCCGTGCGAG-TAACCCAGAATAATCACA
281801 ATTAGG
64 ATTAGG
* * * ** * * *
281807 TGCT-GCTGTGTGAGTCACTCTATTCTTTCGGGACTTTCGTGCGAGTCACCCAGCATAATCACGA
1 TGCTCCCT-TGTGAGTCACTCTAATCCTTCGGGACTCCCGTGCGAGTAACCCAGAATAATCACAA
281871 TTAGG
65 TTAGG
* * *
281876 TGCTCCCTTGCGAGTCACTCTAATCCTTCAAGG-CTCCTGTGCGAGTCAACC
1 TGCTCCCTTGTGAGTCACTCTAATCCTTC-GGGACTCCCGTGCGAGT-AACC
281927 GGAATACTCA
Statistics
Matches: 95, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
68 7 0.07
69 78 0.82
70 10 0.11
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (69 bp):
TGCTCCCTTGTGAGTCACTCTAATCCTTCGGGACTCCCGTGCGAGTAACCCAGAATAATCACAAT
TAGG
Found at i:282200 original size:76 final size:76
Alignment explanation
Indices: 282103--282394 Score: 363
Period size: 76 Copynumber: 3.8 Consensus size: 76
282093 ATTTCTAATT
* * * * * *
282103 GTGAAACTTAACATTGGCTTACACCAGTGAAATGAATATGTAATTCTAGCACTAAACTTATGACA
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCACA
*
282168 TGATTTCAGCA
66 TAATTTCAGCA
* * *
282179 GTGAAACTTAACATTGACTTACACCAATGTATTGAATACGTAATT-CAAGCACCAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAA-CACTAAACTTATCAC
*
282243 ATCATTTCAGCA
65 ATAATTTCAGCA
* * * * *
282255 ATGAAATTTAACATTGACTTACACCAGTAAAATGAATACGTAATACCAACGA-TAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAAC-ACTAAACTTATCAC
*
282319 ATAATTTCAGTA
65 ATAATTTCAGCA
* * * *
282331 TTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCAC
282395 TAACTTACAC
Statistics
Matches: 184, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
75 2 0.01
76 178 0.97
77 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.29
Consensus pattern (76 bp):
GTGAAACTTAACATTGACTTACACCAATGAAATGAATACGTAATTCCAACACTAAACTTATCACA
TAATTTCAGCA
Found at i:282399 original size:50 final size:50
Alignment explanation
Indices: 282334--282444 Score: 195
Period size: 50 Copynumber: 2.2 Consensus size: 50
282324 TTCAGTATTG
* * *
282334 AAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
282384 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
282434 AAACTTATCAC
1 AAACTTATCAC
282445 ATAATTCCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.25
Consensus pattern (50 bp):
AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
Found at i:282430 original size:126 final size:126
Alignment explanation
Indices: 282284--282520 Score: 359
Period size: 126 Copynumber: 1.9 Consensus size: 126
282274 TACACCAGTA
* ** * *
282284 AAATGAATACGTAATACCAACGA-TAAACTTATCACATAATTTCAGTATTGAAACTTAACATTAA
1 AAATGAATACGTAATACCAAC-ACTAAACTTATCACATAATTCCAACAATGAAACTTAAAATTAA
*
282348 CTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
65 CTTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
* *
282410 AAATGAATACGTAATTCCAACACTAAACTTATCACATAATTCCAACAATGAAACTTAAAATTGAC
1 AAATGAATACGTAATACCAACACTAAACTTATCACATAATTCCAACAATGAAACTTAAAATTAAC
** *
282475 TTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCAC
66 TTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCAC
282521 CTAATTCCAA
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 1 0.01
126 98 0.99
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.27
Consensus pattern (126 bp):
AAATGAATACGTAATACCAACACTAAACTTATCACATAATTCCAACAATGAAACTTAAAATTAAC
TTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
Found at i:282450 original size:25 final size:24
Alignment explanation
Indices: 282371--282466 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 24
282361 AATGAATATG
282371 TAATTCCAACACTAAACTTATCAC
1 TAATTCCAACACTAAACTTATCAC
* * * *
282395 TAACTTACACCAACGAAA-TGAAT-AC
1 TAA-TTCCAAC-ACTAAACT-TATCAC
282420 GTAATTCCAACACTAAACTTATCAC
1 -TAATTCCAACACTAAACTTATCAC
*
282445 ATAATTCCAACAATGAAACTTA
1 -TAATTCCAACACT-AAACTTA
282467 AAATTGACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
24 10 0.18
25 28 0.51
26 17 0.31
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.26
Consensus pattern (24 bp):
TAATTCCAACACTAAACTTATCAC
Found at i:282461 original size:202 final size:202
Alignment explanation
Indices: 282195--282559 Score: 536
Period size: 202 Copynumber: 1.8 Consensus size: 202
282185 CTTAACATTG
* * * * * *
282195 ACTTACACCAATGTATTGAATACGTAATTCAAGCACCAAACTTATCACATCATTTCAGCAATGAA
1 ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
* *
282260 ATTTAACATTGACTTACACCAGTAAAATGAATACGTAATACCAACGA-TAAACTTATCACATAAT
66 ACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATACCAAC-ACTAAACTTATCACATAAT
* ** *
282324 TTCAGTATTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
130 TCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
282389 TATCACTA
195 TATCACTA
*
282397 ACTTACACCAACGAAATGAATACGTAATTCCAA-CACTAAACTTATCACATAATTCCAACAATGA
1 ACTTACACCAACGAAATGAATACGTAATT-CAAGCACCAAACTTATCACATAATTCCAACAATGA
* * * *
282461 AACTTAAAATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCACCTAAT
65 AACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATACCAACACTAAACTTATCACATAAT
*
282526 TCCAACAATGAAATTTAACATTAACTTACACCAA
130 TCCAACAATGAAACTTAACATTAACTTACACCAA
282560 TTCAAACTCG
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
201 1 0.01
202 139 0.97
203 3 0.02
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.27
Consensus pattern (202 bp):
ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
ACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATACCAACACTAAACTTATCACATAATT
CCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTT
ATCACTA
Found at i:282464 original size:76 final size:76
Alignment explanation
Indices: 282371--282559 Score: 281
Period size: 76 Copynumber: 2.5 Consensus size: 76
282361 AATGAATATG
* * *
282371 TAATTCCAACACT-AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
282435 AACTTATCACA
66 AACTTATCACA
* * ** *
282446 TAATTCCAACAATGAAACTTAAAATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
*
282511 AACTTATCACC
66 AACTTATCACA
*
282522 TAATTCCAACAATGAAATTTAACATTAACTTACACCAA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAA
282560 TTCAAACTCG
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 12 0.12
76 88 0.88
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (76 bp):
TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
AACTTATCACA
Found at i:283264 original size:69 final size:69
Alignment explanation
Indices: 283145--283303 Score: 171
Period size: 69 Copynumber: 2.3 Consensus size: 69
283135 TATGCTCCCT
* *
283145 TGTGAGTCACTCTAATCCTTCGGATCTTCCGTGCGAGTTAACCGAAATAATTACAATTAGGTGCT
1 TGTGAGTCACTCTAATCCTTCGGATCTTCCGTGCGAGTCAACCGAAATAATCACAATTAGGTGCT
283210 GTTG
66 GTTG
* * * * * *
283214 TGTGAGTCACTCTATTCTTTCGGGA-CTTTCGTGCGAGTC-ACCCAGCATAATCACGATTAGGTG
1 TGTGAGTCACTCTAATCCTTC-GGATCTTCCGTGCGAGTCAACCGA-AATAATCACAATTAGGTG
**
283277 CTCCCT-
64 CT-GTTG
*
283283 TGCGAGTCACTCTAATCCTTC
1 TGTGAGTCACTCTAATCCTTC
283304 AAGGCTCCTG
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
68 4 0.05
69 66 0.89
70 4 0.05
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (69 bp):
TGTGAGTCACTCTAATCCTTCGGATCTTCCGTGCGAGTCAACCGAAATAATCACAATTAGGTGCT
GTTG
Found at i:283599 original size:76 final size:76
Alignment explanation
Indices: 283462--283793 Score: 382
Period size: 76 Copynumber: 4.3 Consensus size: 76
283452 ACATTAACAT
* * * * *
283462 GTAATTCCAGCACTAAA-TTAAACACATCACATTTCCAACTGTGAAACTTAACATTGGCTTACAC
1 GTAATTCCAACACTAAACTT-ATCACAT-A-ATTT-CAGCAGTGAAACTTAACATTGACTTACAC
* *
283526 CAGTGAAATGAATAT
62 CAATGAAATGAATAC
* * * *
283541 GTAATTCTAGCACTAAACTTATGACATGATTTCAGCAGTGAAACTTAACATTGACTTACACCAAT
1 GTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAAT
* *
283606 GTATTGAATAC
66 GAAATGAATAC
* * * * *
283617 GTAATT-CAAGCACCAAACTTATCACATCATTTCAGCAATGAAATTTAACATTGACTTACACCAG
1 GTAATTCCAA-CACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAA
*
283681 TAAAATGAATAC
65 TGAAATGAATAC
* *
283693 GTAATTCCAACGA-TAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAA
1 GTAATTCCAAC-ACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAA
* *
283757 CGAAATGAATAT
65 TGAAATGAATAC
283769 GTAATTCCAACACTAAACTTATCAC
1 GTAATTCCAACACTAAACTTATCAC
283794 TAACTTACAC
Statistics
Matches: 216, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
75 2 0.01
76 183 0.85
77 8 0.04
79 21 0.10
80 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (76 bp):
GTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAAT
GAAATGAATAC
Found at i:283840 original size:50 final size:50
Alignment explanation
Indices: 283733--283843 Score: 195
Period size: 50 Copynumber: 2.2 Consensus size: 50
283723 TTCAGTAGTG
* * *
283733 AAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
283783 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
283833 AAACTTATCAC
1 AAACTTATCAC
283844 ATAATTCCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.25
Consensus pattern (50 bp):
AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
Found at i:283849 original size:25 final size:24
Alignment explanation
Indices: 283770--283865 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 24
283760 AATGAATATG
283770 TAATTCCAACACTAAACTTATCAC
1 TAATTCCAACACTAAACTTATCAC
* * * *
283794 TAACTTACACCAACGAAA-TGAAT-AC
1 TAA-TTCCAAC-ACTAAACT-TATCAC
283819 GTAATTCCAACACTAAACTTATCAC
1 -TAATTCCAACACTAAACTTATCAC
*
283844 ATAATTCCAACAGTGAAACTTA
1 -TAATTCCAACACT-AAACTTA
283866 AAATTGACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
24 10 0.18
25 28 0.51
26 17 0.31
ACGTcount: A:0.44, C:0.25, G:0.05, T:0.26
Consensus pattern (24 bp):
TAATTCCAACACTAAACTTATCAC
Found at i:283863 original size:76 final size:76
Alignment explanation
Indices: 283770--283954 Score: 264
Period size: 76 Copynumber: 2.4 Consensus size: 76
283760 AATGAATATG
* * *
283770 TAATTCCAACACT-AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
283834 AACTTATCACA
66 AACTTATCACA
* * * ** *
283845 TAATTCCAACAGTGAAACTTAAAATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
*
283910 AACTTATCACC
66 AACTTATCACA
*
283921 TAATTCCAACAATGAAATTTAACATTAACTTACA
1 TAATTCCAACAATGAAACTTAACATTAACTTACA
283955 GCAATTCAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 12 0.12
76 84 0.88
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.27
Consensus pattern (76 bp):
TAATTCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
AACTTATCACA
Found at i:283899 original size:126 final size:126
Alignment explanation
Indices: 283683--283919 Score: 377
Period size: 126 Copynumber: 1.9 Consensus size: 126
283673 TACACCAGTA
* ** *
283683 AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAAC
1 AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAAC
*
283748 TTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
66 TTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
*
283809 AAATGAATACGTAATTCCAAC-ACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTGA
1 AAATGAATACGTAATTCCAACGA-TAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAA
** *
283873 CTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCAC
65 CTTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCAC
283920 CTAATTCCAA
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
125 1 0.01
126 100 0.99
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (126 bp):
AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAAC
TTACACCAACGAAATGAATACGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
Found at i:285002 original size:76 final size:76
Alignment explanation
Indices: 284865--285196 Score: 382
Period size: 76 Copynumber: 4.3 Consensus size: 76
284855 ACATTAACAT
* * * * *
284865 GTAATTCCAGCACTAAA-TTAAACACATCACATTTCTAACTGTGAAACTTAACATTGGCTTACAC
1 GTAATTCCAACACTAAACTT-ATCACAT-A-ATTTC-AGCAGTGAAACTTAACATTGACTTACAC
* *
284929 CAGTGAAATGAATAT
62 CAATGAAATGAATAC
* * * *
284944 GTAATTCTAGCACTAAACTTATGACATGATTTCAGCAGTGAAACTTAACATTGACTTACACCAAT
1 GTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAAT
* *
285009 GTATTGAATAC
66 GAAATGAATAC
* * * * *
285020 GTAATT-CAAGCACCAAACTTATCACATCATTTCAGCAATGAAATTTAACATTGACTTACACCAG
1 GTAATTCCAA-CACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAA
*
285084 TAAAATGAATAC
65 TGAAATGAATAC
* *
285096 GTAATTCCAACGA-TAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAACTTACACCAA
1 GTAATTCCAAC-ACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAA
* *
285160 CGAAATGAATAT
65 TGAAATGAATAC
285172 GTAATTCCAACACTAAACTTATCAC
1 GTAATTCCAACACTAAACTTATCAC
285197 TAACTTACAC
Statistics
Matches: 216, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
75 2 0.01
76 182 0.84
77 9 0.04
79 21 0.10
80 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (76 bp):
GTAATTCCAACACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAAT
GAAATGAATAC
Found at i:285243 original size:50 final size:50
Alignment explanation
Indices: 285136--285246 Score: 195
Period size: 50 Copynumber: 2.2 Consensus size: 50
285126 TTCAGTAGTG
* * *
285136 AAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
285186 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
1 AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
285236 AAACTTATCAC
1 AAACTTATCAC
285247 ATAATTCCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.25
Consensus pattern (50 bp):
AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACT
Found at i:285252 original size:25 final size:24
Alignment explanation
Indices: 285173--285268 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 24
285163 AATGAATATG
285173 TAATTCCAACACTAAACTTATCAC
1 TAATTCCAACACTAAACTTATCAC
* * * *
285197 TAACTTACACCAACGAAA-TGAAT-AC
1 TAA-TTCCAAC-ACTAAACT-TATCAC
285222 GTAATTCCAACACTAAACTTATCAC
1 -TAATTCCAACACTAAACTTATCAC
*
285247 ATAATTCCAACAGTGAAACTTA
1 -TAATTCCAACACT-AAACTTA
285269 AAATTGATTT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
24 10 0.18
25 28 0.51
26 17 0.31
ACGTcount: A:0.44, C:0.25, G:0.05, T:0.26
Consensus pattern (24 bp):
TAATTCCAACACTAAACTTATCAC
Found at i:285266 original size:76 final size:76
Alignment explanation
Indices: 285173--285361 Score: 245
Period size: 76 Copynumber: 2.5 Consensus size: 76
285163 AATGAATATG
* * * *
285173 TAATTCCAACACT-AAACTTATCACTAACTTACACCAACGAAATGAATACGTAATTCCAACACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACAAAATGAATACGTAATTCCAACACTA
*
285237 AACTTATCACA
66 AACTAATCACA
* * * * ** *
285248 TAATTCCAACAGTGAAACTTAAAATTGATTTACACCAGTAAAATGAATACGTAATTCCAGCACTA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAACAAAATGAATACGTAATTCCAACACTA
*
285313 AACTAATCACC
66 AACTAATCACA
*
285324 TAATTCCAACAATGAAATTTAACATTAACTTACACCAA
1 TAATTCCAACAATGAAACTTAACATTAACTTACACCAA
285362 TTCAAACTCG
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
75 12 0.13
76 83 0.87
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.26
Consensus pattern (76 bp):
TAATTCCAACAATGAAACTTAACATTAACTTACACCAACAAAATGAATACGTAATTCCAACACTA
AACTAATCACA
Found at i:285283 original size:202 final size:202
Alignment explanation
Indices: 284997--285361 Score: 527
Period size: 202 Copynumber: 1.8 Consensus size: 202
284987 CTTAACATTG
* * * * * *
284997 ACTTACACCAATGTATTGAATACGTAATTCAAGCACCAAACTTATCACATCATTTCAGCAATGAA
1 ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
* * *
285062 ATTTAACATTGACTTACACCAGTAAAATGAATACGTAATTCCAACGA-TAAACTTATCACATAAT
66 ACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATTCCAAC-ACTAAACTAATCACATAAT
* ** *
285126 TTCAGTAGTGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
130 TCCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACT
285191 TATCACTA
195 TATCACTA
* *
285199 ACTTACACCAACGAAATGAATACGTAATTCCAA-CACTAAACTTATCACATAATTCCAACAGTGA
1 ACTTACACCAACGAAATGAATACGTAATT-CAAGCACCAAACTTATCACATAATTCCAACAATGA
* * *
285263 AACTTAAAATTGATTTACACCAGTAAAATGAATACGTAATTCCAGCACTAAACTAATCACCTAAT
65 AACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATTCCAACACTAAACTAATCACATAAT
*
285328 TCCAACAATGAAATTTAACATTAACTTACACCAA
130 TCCAACAATGAAACTTAACATTAACTTACACCAA
285362 TTCAAACTCG
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
201 1 0.01
202 138 0.97
203 3 0.02
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (202 bp):
ACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAACTTATCACATAATTCCAACAATGAA
ACTTAAAATTGACTTACACCAGTAAAATGAATACGTAATTCCAACACTAAACTAATCACATAATT
CCAACAATGAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTT
ATCACTA
Found at i:285302 original size:126 final size:126
Alignment explanation
Indices: 285086--285322 Score: 350
Period size: 126 Copynumber: 1.9 Consensus size: 126
285076 TACACCAGTA
* ** *
285086 AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTTCAGTAGTGAAACTTAACATTAAC
1 AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAAC
* * *
285151 TTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCACTAACTTACACCAACG
66 TTACACCAACAAAATGAATACGTAATTCCAACACTAAACTAATCACTAACTTACACCAACG
*
285212 AAATGAATACGTAATTCCAAC-ACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTGA
1 AAATGAATACGTAATTCCAACGA-TAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAA
* ** *
285276 TTTACACCAGTAAAATGAATACGTAATTCCAGCACTAAACTAATCAC
65 CTTACACCAACAAAATGAATACGTAATTCCAACACTAAACTAATCAC
285323 CTAATTCCAA
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
125 1 0.01
126 97 0.99
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (126 bp):
AAATGAATACGTAATTCCAACGATAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTAAC
TTACACCAACAAAATGAATACGTAATTCCAACACTAAACTAATCACTAACTTACACCAACG
Found at i:286058 original size:69 final size:69
Alignment explanation
Indices: 285932--286108 Score: 180
Period size: 69 Copynumber: 2.6 Consensus size: 69
285922 CACATGCAAA
* * * * *
285932 TACGATAATATGCTCCCTTGTGAGTCACTCTAATCCCTCGGAGCTCCCGTGCAAGTCAACC-GAA
1 TACGATTATGTGCTCCCTTGTGAGTCACTCTAATCCTTCGGAGCTCCCATGCAAGTCACCCAG-A
285996 ATAAT
65 ATAAT
* ** *
286001 TACGATTATGTGCT-CCTGTGTGAGTCACTCTATTCCTTCGG-GCCTTTCATGCGAGTCACCCAG
1 TACGATTATGTGCTCCCT-TGTGAGTCACTCTAATCCTTCGGAG-CTCCCATGCAAGTCACCCAG
*
286064 CATAAT
64 AATAAT
* * * *
286070 CACGATTAGGAGCTCCCTTGCGAGTCACTCTAATCCTTC
1 TACGATTATGTGCTCCCTTGTGAGTCACTCTAATCCTTC
286109 AAGGCTCCTG
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
68 4 0.04
69 81 0.91
70 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (69 bp):
TACGATTATGTGCTCCCTTGTGAGTCACTCTAATCCTTCGGAGCTCCCATGCAAGTCACCCAGAA
TAAT
Found at i:286392 original size:76 final size:76
Alignment explanation
Indices: 286267--286690 Score: 479
Period size: 76 Copynumber: 5.6 Consensus size: 76
286257 ACATTAACAT
* *
286267 GTAATTCCAGCACTAAA-TTAAACACATCACAATTCTAGCAGTGAAACTTAACATTGACTTACAC
1 GTAATTCCAGCACTAAACTT-ATCACAT-A-ATTTC-AGCAGTGAAACTTAACATTGACTTACAC
*
286331 CAGTGAAATGAATAT
62 CAGTGAAATGAATAC
* * * * *
286346 GTAATTCTAGCACCAAACTTATGACATGATTTCAGCAGTGAAACTTAACATTGACTTACACCAGC
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
*
286411 GAATTGAATAC
66 GAAATGAATAC
* * * * * * *
286422 GTAATTCAAGCACCAAACTTATCACATCATTTCAGCAATGAAATTTAACACTGACTTACATCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
286487 -AAATTGAATAC
66 GAAA-TGAATAC
* * * *
286498 GTAATTCCAACGA-TAAACTTATCACATAATTTCAGTAGTG-----TAACATTAACTTACACCAA
1 GTAATTCCAGC-ACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAG
*
286557 CGAAATGAATAC
65 TGAAATGAATAC
* * * *
286569 GTAATTCCAACACTAAACTTATCACATAATTCCAACAGTGAAACTTAAAATTGACTTACACCAGT
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
286634 GAAATGAATAC
66 GAAATGAATAC
* * *
286645 GTAATTCCAGCACTAAACTTATCACCTAATTCCAGCACT-AAACTTA
1 GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTA
286691 TCACATAATT
Statistics
Matches: 295, Mismatches: 40, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
70 1 0.00
71 57 0.19
72 3 0.01
75 9 0.03
76 198 0.67
77 5 0.02
79 20 0.07
80 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (76 bp):
GTAATTCCAGCACTAAACTTATCACATAATTTCAGCAGTGAAACTTAACATTGACTTACACCAGT
GAAATGAATAC
Found at i:286599 original size:25 final size:25
Alignment explanation
Indices: 286570--286703 Score: 96
Period size: 25 Copynumber: 5.3 Consensus size: 25
286560 AATGAATACG
286570 TAATTCCAACACTAAACTTATCACA
1 TAATTCCAACACTAAACTTATCACA
* *
286595 TAATTCCAACAGTGAAACTTA--AAA
1 TAATTCCAACACT-AAACTTATCACA
* * * * * *
286619 TTGACTTACACCAGTGAAA-TGAAT-ACG
1 -T-AATTCCAACACT-AAACT-TATCACA
* *
286646 TAATTCCAGCACTAAACTTATCACC
1 TAATTCCAACACTAAACTTATCACA
*
286671 TAATTCCAGCACTAAACTTATCACA
1 TAATTCCAACACTAAACTTATCACA
286696 TAATTCCA
1 TAATTCCA
286704 GCAATGAAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
24 7 0.08
25 57 0.66
26 22 0.25
27 1 0.01
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.28
Consensus pattern (25 bp):
TAATTCCAACACTAAACTTATCACA
Found at i:286611 original size:147 final size:148
Alignment explanation
Indices: 286305--286681 Score: 474
Period size: 147 Copynumber: 2.5 Consensus size: 148
286295 ACAATTCTAG
* * * *
286305 CAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATATGTAATTCTAGCACCAAACTTATGA
1 CAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCA
* * * *
286370 CATGATTTCAGCAGTGAAACTTAACATTGACTTACACCAGCGAATTGAATACGTAATTCAAGCAC
66 CATAATTTCAGCAGTG--A--TAACATTAACTTACACCAACGAAATGAATACGTAATTCAAGCAC
* * *
286435 CAAACTTATCACATCATTTCAG
127 CAAACTTATCACATAATTCCAA
* * * * *
286457 CAATGAAATTTAACACTGACTTACATCAGT-AAATTGAATACGTAATTCCAACGA-TAAACTTAT
1 CAGTGAAACTTAACATTGACTTACACCAGTGAAA-TGAATACGTAATTCCAGC-ACTAAACTTAT
* *
286520 CACATAATTTCAGTAGTG-TAACATTAACTTACACCAACGAAATGAATACGTAATTCCAA-CACT
64 CACATAATTTCAGCAGTGATAACATTAACTTACACCAACGAAATGAATACGTAATT-CAAGCACC
286583 AAACTTATCACATAATTCCAA
128 AAACTTATCACATAATTCCAA
*
286604 CAGTGAAACTTAAAATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCA
1 CAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCA
* *
286669 CCTAATTCCAGCA
66 CATAATTTCAGCA
286682 CTAAACTTAT
Statistics
Matches: 193, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
146 1 0.01
147 118 0.61
148 6 0.03
151 3 0.02
152 64 0.33
153 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (148 bp):
CAGTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAGCACTAAACTTATCA
CATAATTTCAGCAGTGATAACATTAACTTACACCAACGAAATGAATACGTAATTCAAGCACCAAA
CTTATCACATAATTCCAA
Found at i:286704 original size:25 final size:25
Alignment explanation
Indices: 286646--286706 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
286636 AATGAATACG
*
286646 TAATTCCAGCACTAAACTTATCACC
1 TAATTCCAGCACTAAACTTATCACA
286671 TAATTCCAGCACTAAACTTATCACA
1 TAATTCCAGCACTAAACTTATCACA
286696 TAATTCCAGCA
1 TAATTCCAGCA
286707 ATGAAATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.28
Consensus pattern (25 bp):
TAATTCCAGCACTAAACTTATCACA
Found at i:287425 original size:69 final size:70
Alignment explanation
Indices: 287315--287509 Score: 206
Period size: 69 Copynumber: 2.8 Consensus size: 70
287305 TACGATAATA
* * * *
287315 TGCTCCCTTGTGAGTAACTCTAATCCTT-AGGAGTTTCCGTGCGAGTCAAAC-GAAATAATTACG
1 TGCTCCCTTGTGAGTCACTCTAATCCTTCAGGACTTTCCGTGCGAGTCAACCAG-AATAATCACG
287378 ATTAGG
65 ATTAGG
* * * * *
287384 TGCT-GCTGTGTGAGTCACTCTATTCCTTCGGGACTTT-CGTGCGAGTCACCCAGCATAATCACG
1 TGCTCCCT-TGTGAGTCACTCTAATCCTTCAGGACTTTCCGTGCGAGTCAACCAGAATAATCACG
287447 ATTAGG
65 ATTAGG
* *
287453 TGCTCCCTTGCGAGTCACTCTAATCCTTCAAGG-C--TCCTGTGCGAGTCAACCGGAATA
1 TGCTCCCTTGTGAGTCACTCTAATCCTTC-AGGACTTTCC-GTGCGAGTCAACCAGAATA
287510 CTCATTATTA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
67 1 0.01
68 3 0.03
69 88 0.85
70 11 0.11
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (70 bp):
TGCTCCCTTGTGAGTCACTCTAATCCTTCAGGACTTTCCGTGCGAGTCAACCAGAATAATCACGA
TTAGG
Found at i:287776 original size:76 final size:76
Alignment explanation
Indices: 287679--288084 Score: 463
Period size: 76 Copynumber: 5.3 Consensus size: 76
287669 ATTTCTAACT
* * * * *
287679 GTGAAACTTAACATTGGCTTACACCAGTGAAATGAATATGTAATTCTAGCACTAAACTTATGACA
1 GTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAAACTTATCACA
* *
287744 TGATTTCAGCA
66 TAATTCCAGCA
* * * * * *
287755 GTGAAAGTTAACATTAACTTACACCAATGTATTGAATACGTAATT-CAAGCACCAAACTTATCAC
1 GTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAA-CACTAAACTTATCAC
* *
287819 ATCATTTCAGCA
65 ATAATTCCAGCA
* * * * *
287831 ATGAAATTTAACATTGACTTGCACCAGTAAAATGAATACATAATTCCAACACTAAACTTATCACA
1 GTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAAACTTATCACA
*
287896 TAATTCCAGTA
66 TAATTCCAGCA
* * ** *
287907 GTAAAACTTAACATTAACTTACACCAACGAAATGAATATGTAATTCCAACACTAAACTTATCACA
1 GTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAAACTTATCACA
*
287972 TAATTCCAACA
66 TAATTCCAGCA
* * * * * *
287983 GTGAAACTTAAAATTGACTTACACCAGTGAAAAGAATACGTAAATCCAACAGTAAACTTATTACC
1 GTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAAACTTATCACA
*
288048 TAATTCCATCA
66 TAATTCCAGCA
* * *
288059 ATGAAATTTATCATTGACTTACACCA
1 GTGAAACTTAACATTGACTTACACCA
288085 ATTCAAACTC
Statistics
Matches: 275, Mismatches: 53, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
75 1 0.00
76 271 0.99
77 3 0.01
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.29
Consensus pattern (76 bp):
GTGAAACTTAACATTGACTTACACCAGTGAAATGAATACGTAATTCCAACACTAAACTTATCACA
TAATTCCAGCA
Found at i:288790 original size:69 final size:69
Alignment explanation
Indices: 288671--288804 Score: 155
Period size: 69 Copynumber: 1.9 Consensus size: 69
288661 TATGCTCCCT
* * *
288671 TGTGAGTAACTCTAATCCTTAGGAGTTTCCGTGCGAGTCAACCGAAATAATTACGATTAGGTGCT
1 TGTGAGTAACTCTAATCCTTAGGACTTTCCGTGCGAGTCAACCGAAATAATCACGAATAGGTGCT
288736 GCTG
66 GCTG
* * * * * *
288740 TGTGAGTCACTCTATTCCTTCGGGACTTT-CGTGCGAGTC-ACCCAGCATAATCACGAATATGTG
1 TGTGAGTAACTCTAATCCTT-AGGACTTTCCGTGCGAGTCAACCGA-AATAATCACGAATAGGTG
288803 CT
64 CT
288805 CCCTTCCGAG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
68 4 0.07
69 44 0.81
70 6 0.11
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (69 bp):
TGTGAGTAACTCTAATCCTTAGGACTTTCCGTGCGAGTCAACCGAAATAATCACGAATAGGTGCT
GCTG
Done.