Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006986.1 Hibiscus syriacus cultivar Beakdansim tig00018006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55521

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7120--7180
31
2.0
31
90
0
95
34
16
9
39
1.82
8571--8818
2
123.5
2
65
19
81
46
3
4
45
1.40
8544--8841
20
15.8
19
70
18
128
46
5
4
44
1.45
8574--8623
19
2.5
21
81
12
61
50
2
4
44
1.32
8607--8910
11
27.5
11
67
17
73
45
4
3
46
1.41
8583--8798
54
4.0
52
72
17
163
46
4
4
44
1.41
8719--8809
9
10.7
9
68
23
54
43
3
3
49
1.35
8677--8809
13
10.3
13
69
19
55
43
3
6
47
1.43
8555--8824
116
2.4
110
88
5
393
45
4
4
45
1.44
8555--8904
116
3.1
116
83
8
307
46
4
4
44
1.44
9229--10092
28
28.9
31
67
24
127
51
2
6
39
1.40
9249--9301
19
2.8
20
74
8
56
56
3
1
37
1.28
9190--9352
79
2.0
83
80
9
185
52
3
6
38
1.42
9297--9536
22
11.2
22
72
18
120
53
2
7
35
1.43
9388--9553
20
7.9
20
71
21
92
53
3
7
36
1.46
9408--9522
42
2.7
42
81
11
112
53
2
7
35
1.44
9504--10779
2
645.0
2
66
22
370
43
5
3
47
1.43
10079--10678
7
80.1
8
67
26
80
37
7
2
52
1.44
10854--10886
2
17.0
2
93
6
59
48
0
0
51
1.00
11185--11230
24
1.9
24
86
8
67
36
13
0
50
1.41
11332--11360
3
9.7
3
100
0
58
68
31
0
0
0.89
11513--11561
20
2.5
20
78
15
57
42
12
2
42
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11847--11892
24
1.9
24
82
8
58
32
10
0
56
1.34
11967--12032
2
32.0
2
75
6
60
48
4
4
42
1.44
12021--12220
65
3.1
64
77
13
203
53
1
9
37
1.40
12021--12220
22
9.2
22
78
13
186
53
1
9
37
1.40
12131--12242
36
3.1
35
81
12
129
53
1
7
37
1.39
12103--12257
26
6.1
26
70
23
75
53
1
6
38
1.38
12394--12449
16
3.5
16
76
13
53
41
10
21
26
1.86
12449--12522
32
2.3
32
79
9
80
37
17
22
21
1.94
12472--12516
16
2.8
16
75
0
54
42
15
20
22
1.89
23937--23961
13
1.9
13
100
0
50
16
48
24
12
1.79
23938--23977
18
2.2
18
95
0
71
20
50
20
10
1.76
28156--28475
63
5.1
63
94
0
523
29
6
8
55
1.55
29121--29224
54
1.9
54
92
0
172
33
10
13
42
1.79
35326--35428
48
2.2
48
98
1
199
38
3
20
36
1.71
43437--43462
13
2.0
13
100
0
52
30
0
7
61
1.24
45830--45920
45
2.0
46
89
2
139
28
19
24
27
1.99
48580--48676
44
2.2
44
83
7
117
26
20
26
25
1.99
52029--52081
16
3.3
16
91
0
88
20
30
16
32
1.95
55036--55122
43
2.0
43
86
4
122
27
17
26
28
1.97

Tables:   1

The End!