Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006988.1 Hibiscus syriacus cultivar Beakdansim tig00018025_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119611

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1997--2271
43
6.3
43
70
8
157
33
19
15
31
1.93
2822--2906
15
6.1
15
67
18
58
3
14
1
81
0.89
2822--2905
27
3.2
26
80
14
100
3
14
1
80
0.90
2822--2910
21
4.4
20
74
21
71
4
14
1
79
0.94
2848--2905
6
9.8
6
77
20
52
1
15
1
81
0.86
3589--3663
14
5.4
13
73
20
62
4
16
0
80
0.87
3571--3664
28
3.3
26
73
16
73
5
13
1
79
0.95
3595--3663
23
3.2
22
73
16
65
4
15
0
79
0.88
7118--7152
16
2.2
16
90
10
54
71
0
8
20
1.11
11912--11947
16
2.2
16
95
0
63
27
22
19
30
1.98
12014--12060
19
2.5
19
96
0
85
31
21
10
36
1.88
12698--12741
17
2.5
18
82
14
56
54
6
11
27
1.61
18459--18508
24
2.0
24
84
3
64
54
0
2
44
1.11
20641--20743
50
2.2
46
80
16
115
53
9
2
33
1.49
23202--23244
14
3.0
14
83
12
52
30
2
0
67
1.03
24035--24668
6
105.8
6
99
0
1261
66
0
0
33
0.92
25216--25266
27
1.9
26
84
4
66
60
3
1
33
1.26
29519--29548
2
15.0
2
100
0
60
50
0
50
0
1.00
30931--31022
43
2.1
43
100
0
184
32
16
8
42
1.79
36414--36454
21
2.0
21
85
9
57
53
0
0
46
1.00
41697--41807
24
4.6
24
78
0
114
21
10
14
53
1.71
43067--43110
20
2.2
20
88
8
63
34
0
4
61
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60534--60796
133
2.0
133
98
0
508
22
16
33
27
1.95
63509--63544
6
6.0
6
86
0
54
19
19
13
47
1.83
63519--63593
32
2.3
32
90
0
123
18
16
10
54
1.70
64169--64195
13
2.1
13
100
0
54
48
7
29
14
1.71
67794--67869
40
1.9
39
84
7
100
38
18
19
23
1.93
69668--69873
35
5.9
34
84
7
238
36
20
20
22
1.95
70203--70304
42
2.5
42
81
1
125
25
22
21
30
1.99
69877--71123
215
5.8
215
91
1
1915
32
15
19
32
1.93
71194--71312
56
2.1
55
82
11
145
35
16
21
26
1.95
71237--71345
55
2.0
56
83
5
141
32
15
27
24
1.96
76520--76564
16
2.8
16
89
3
63
31
13
20
35
1.91
76964--77229
133
2.0
133
96
0
487
22
16
33
27
1.96
83203--83240
20
1.9
20
88
0
58
39
13
18
28
1.88
86026--86100
36
2.1
36
87
0
105
26
21
17
34
1.95
88684--88779
39
2.4
40
84
5
115
44
1
16
37
1.55
91209--91244
17
2.1
17
94
0
63
52
11
30
5
1.59
91208--91269
16
3.8
16
78
4
61
43
14
37
4
1.67
93684--93792
40
2.7
41
89
1
166
51
2
7
38
1.44
93686--93811
40
3.1
40
83
7
105
50
3
9
36
1.51
97045--97122
26
3.0
26
90
0
120
47
7
28
16
1.74
100878--100955
23
3.3
23
81
1
93
32
23
20
24
1.98
100962--101282
103
3.1
103
98
0
615
36
23
13
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106084--106518
216
2.0
216
98
1
847
38
17
7
36
1.79
107079--107155
23
3.3
23
75
8
75
33
20
19
25
1.96
107162--107482
103
3.1
103
97
0
597
36
23
13
26
1.92
112469--112526
24
2.5
22
81
13
71
53
13
3
29
1.56
117320--117416
42
2.4
41
81
6
108
28
15
25
29
1.96
117451--117508
20
2.8
20
71
21
57
24
17
25
32
1.96

Tables:   1

The End!