genome.fa.s6990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006990.1 Hibiscus syriacus cultivar Beakdansim tig00018027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140281

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8196--8236	22	1.9	21	95	5	73	19	9	4	65	1.40
17304--17346	23	1.9	23	90	4	70	18	11	4	65	1.42
25107--25166	30	2.0	31	83	9	79	33	28	6	31	1.83
31531--31606	36	2.1	36	97	0	143	43	14	10	31	1.79
36079--36108	15	2.0	15	100	0	60	13	46	26	13	1.80
36528--36603	36	2.1	36	97	0	143	43	14	10	31	1.79
37126--37168	18	2.4	18	96	0	77	37	4	27	30	1.77
40984--41108	45	2.8	45	88	3	189	29	21	8	40	1.83
41213--41293	39	2.0	40	92	2	137	33	25	16	24	1.96
58076--58204	59	2.2	59	88	0	186	29	26	17	26	1.98
58893--58955	29	2.1	29	82	2	72	31	22	6	39	1.79
58904--58964	29	2.1	30	84	3	79	31	21	9	37	1.86
67281--67318	20	1.9	20	88	0	58	31	34	18	15	1.92
71091--71144	25	2.2	25	83	6	65	44	0	5	50	1.25
74632--74675	23	2.0	22	86	4	61	15	6	18	59	1.58
74798--74939	55	2.6	55	82	0	167	43	12	22	21	1.86
78949--79173	125	1.8	125	88	1	344	32	17	26	23	1.96
78949--79210	125	2.1	125	85	4	341	32	16	26	24	1.96
80470--80623	37	4.1	37	87	2	211	38	21	17	22	1.93
80474--80639	74	2.3	74	91	3	264	36	22	16	24	1.94
81017--81527	54	9.5	54	81	3	573	31	18	26	24	1.97
81017--81498	108	4.5	108	86	1	662	31	18	26	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81005--81498	215	2.3	216	86	1	695	30	18	26	24	1.98
81003--81747	108	6.9	109	79	7	584	31	16	25	26	1.97
81485--81723	54	4.4	54	85	2	311	31	12	25	30	1.93
81485--81715	109	2.1	108	87	4	331	31	12	25	29	1.93
81492--81745	109	2.3	109	84	7	302	32	13	25	29	1.93
82012--82062	24	2.2	22	83	13	59	50	0	3	45	1.20
83079--83251	95	1.8	92	85	6	240	38	8	15	38	1.78
82995--83540	161	3.5	160	75	8	530	39	7	13	39	1.74
83156--83343	66	2.8	66	75	10	186	39	5	14	39	1.71
83345--83396	26	2.0	27	88	3	79	34	9	15	40	1.80
83329--83538	93	2.3	93	94	0	359	37	8	14	39	1.77
98129--98167	15	2.6	15	87	0	60	15	7	17	58	1.59
106241--106343	32	3.2	32	85	0	143	27	23	27	22	1.99
110448--110613	90	1.9	90	93	1	289	46	6	12	34	1.67
117204--117365	89	1.8	88	89	4	254	46	8	11	33	1.70
118801--118854	22	2.6	22	80	16	62	51	7	5	35	1.53
122380--123204	166	5.0	166	93	2	1399	31	19	12	37	1.88
122374--123204	334	2.5	331	92	2	1393	31	19	12	37	1.88
125970--126053	32	2.6	31	79	5	96	22	27	27	22	1.99
126034--126080	20	2.3	20	92	0	76	25	23	29	21	1.99
126034--126088	20	2.8	20	88	0	65	25	27	27	20	1.99
133046--133151	32	3.3	32	75	5	108	37	16	16	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137544--137573	14	2.1	14	100	0	60	40	0	6	53	1.27
138564--138616	25	2.1	25	82	6	63	37	0	1	60	1.08
138630--138671	21	2.0	21	85	0	57	50	0	0	50	1.00
139679--139723	3	16.0	3	86	13	69	35	0	0	64	0.94
139681--139723	11	3.6	11	82	17	59	34	0	0	65	0.93
139679--139723	17	2.7	17	96	3	83	35	0	0	64	0.94

Tables:   1

The End!