genome.fa.s6994.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006994.1 Hibiscus syriacus cultivar Beakdansim tig00018033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104793

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1277--1337	19	3.2	19	77	13	63	29	0	13	57	1.36
1272--1400	62	2.0	63	86	8	183	27	0	16	55	1.46
1157--1328	75	2.3	76	84	5	221	30	2	9	57	1.44
1958--1997	18	2.3	17	82	4	53	32	2	0	65	1.06
13026--13104	38	2.1	38	97	0	149	36	15	15	32	1.88
17298--17336	20	2.0	19	85	5	51	17	33	17	30	1.94
18825--18858	16	2.1	16	94	0	59	41	26	0	32	1.56
19482--19631	2	76.5	2	96	3	279	50	50	0	0	1.00
19629--19861	4	58.2	4	99	0	457	49	24	0	25	1.50
22147--22200	24	2.2	24	90	0	81	31	27	20	20	1.97
23354--23582	57	4.0	57	89	1	316	36	30	18	14	1.91
23354--23582	114	2.0	114	89	0	350	36	30	18	14	1.91
23649--23698	24	2.1	24	84	0	64	38	16	16	30	1.90
25429--25588	65	2.5	65	84	7	193	31	23	17	28	1.97
32155--32228	35	2.1	34	90	2	112	33	28	28	9	1.88
32306--32380	24	3.2	23	84	5	105	36	21	17	25	1.95
32310--32395	23	3.7	23	84	3	109	38	19	17	24	1.93
33349--33401	26	2.0	26	85	0	70	24	20	16	37	1.93
33479--33514	18	2.0	18	88	0	54	30	16	0	52	1.44
33949--33982	17	1.9	18	88	5	52	35	14	11	38	1.83
34785--34825	10	4.6	9	88	11	50	21	21	36	19	1.95
34786--34839	8	6.6	8	78	20	51	22	22	38	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34812--34887	13	5.5	13	79	14	80	18	21	43	17	1.88
36843--36915	33	2.1	34	87	5	103	32	28	28	9	1.89
37947--38021	35	2.1	35	92	0	123	33	29	28	9	1.88
39055--39129	35	2.1	35	92	0	123	33	29	28	9	1.88
39207--39281	24	3.2	23	84	5	105	36	21	17	25	1.95
39211--39296	23	3.7	23	84	3	109	38	19	17	24	1.93
40251--40303	26	2.0	26	85	0	70	24	20	16	37	1.93
40381--40416	18	2.0	18	88	0	54	30	16	0	52	1.44
41713--41751	7	5.3	7	88	11	60	25	25	35	12	1.92
41712--41751	15	2.7	15	100	0	80	25	25	37	12	1.91
41693--41767	8	9.5	8	79	19	79	22	24	37	16	1.93
41741--41816	13	5.5	13	79	14	80	17	21	44	17	1.86
41735--41789	18	2.9	18	86	8	65	16	21	43	18	1.88
41743--41802	31	1.9	31	93	0	102	16	20	45	18	1.86
43099--43143	21	2.1	21	87	0	63	31	28	24	15	1.96
43971--44066	32	3.0	32	79	14	126	29	17	18	34	1.94
44058--44180	30	4.1	30	93	1	203	21	21	25	30	1.99
44453--44496	2	22.0	2	85	0	61	47	0	6	45	1.29
47741--47771	12	2.5	13	94	5	55	35	0	16	48	1.46
48008--48052	21	2.1	21	87	0	63	31	28	24	15	1.96
48078--48122	22	2.0	22	82	4	54	31	31	26	11	1.91
48880--48975	32	3.0	32	75	14	108	29	15	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48881--48978	31	3.2	30	76	11	99	29	17	18	34	1.94
48967--49089	30	4.1	30	95	1	212	21	21	26	30	1.98
49337--49400	2	32.0	2	96	0	119	48	0	1	50	1.10
52667--52825	64	2.5	63	85	5	203	30	23	17	28	1.97
55341--55375	18	1.9	18	88	0	52	51	11	20	17	1.75
57442--57554	45	2.5	45	98	0	217	18	31	15	33	1.93
59076--59105	6	5.0	6	100	0	60	33	16	33	16	1.92
63733--63767	18	1.9	18	94	0	61	0	51	5	42	1.25
76865--76899	13	2.6	14	86	9	54	31	5	0	62	1.18
76856--77073	76	3.0	75	81	8	209	29	1	12	56	1.44
76893--77080	76	2.6	75	85	6	235	28	0	14	56	1.43
76893--77087	70	2.7	75	83	9	233	29	0	14	55	1.43
77935--77970	17	2.1	17	89	0	54	16	41	27	13	1.87
80024--80057	17	2.0	17	88	0	50	23	0	2	73	0.97
83328--83377	21	2.4	21	96	0	82	42	20	14	24	1.88
86112--86211	24	4.2	24	71	10	78	47	17	12	24	1.81
86105--86213	48	2.3	48	75	0	110	48	16	11	22	1.79
87354--87389	18	2.0	18	88	0	54	30	16	0	52	1.44
88707--88761	13	4.5	13	82	13	71	12	20	49	18	1.79
88715--88765	23	2.2	23	92	0	84	9	17	52	19	1.72
89823--89882	3	19.0	3	86	10	84	33	1	0	65	1.03
89822--89882	13	5.0	13	76	15	76	32	1	0	65	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91286--91394	37	3.0	37	77	19	97	28	2	1	66	1.15
91364--91453	25	3.4	26	73	17	62	32	3	1	63	1.18
91536--91581	22	2.1	22	83	0	56	50	0	0	50	1.00

Tables:   1

The End!