genome.fa.s6999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006999.1 Hibiscus syriacus cultivar Beakdansim tig00018055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83537

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19663--19706	22	2.0	21	82	4	52	40	29	15	13	1.86
21591--21625	16	2.2	16	90	5	54	54	14	22	8	1.67
27025--27087	28	2.2	28	83	5	74	47	20	0	31	1.51
27488--28086	287	2.1	285	83	5	739	33	16	6	44	1.71
28956--28996	3	14.0	3	89	5	66	31	2	0	65	1.05
29533--29598	13	5.1	12	76	20	53	40	4	0	54	1.21
29533--29592	27	2.4	25	83	8	68	41	5	0	53	1.23
29713--29759	2	24.0	2	95	4	87	51	0	0	48	1.00
29977--30056	34	2.4	33	81	4	97	40	3	12	43	1.60
30007--30215	34	6.0	36	72	14	122	34	1	18	44	1.61
30118--30199	4	20.5	4	75	16	64	30	2	21	45	1.65
30080--30175	15	6.4	15	77	12	108	32	1	20	45	1.58
30067--30171	11	10.2	10	68	20	56	33	0	20	45	1.57
30084--30187	15	6.7	15	69	20	56	33	0	21	44	1.59
30317--30349	2	16.5	2	100	0	66	48	0	0	51	1.00
30374--30405	16	2.0	16	100	0	64	50	6	6	37	1.53
30622--30665	2	22.5	2	95	4	81	50	0	0	50	1.00
30383--30663	151	1.8	153	80	8	340	42	9	6	40	1.65
33305--33498	30	6.4	30	79	5	194	61	9	12	15	1.56
33303--33494	60	3.2	59	82	2	222	60	9	13	16	1.57
33314--33490	90	2.0	91	83	5	225	63	9	11	15	1.52
34954--34993	3	13.0	3	89	5	62	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34945--34982	19	2.0	19	89	0	58	65	2	0	31	1.06
34955--35001	9	5.0	10	87	7	64	65	2	0	31	1.04
35058--35154	20	5.1	20	67	22	73	54	2	1	42	1.19
35051--35180	38	3.4	38	82	12	153	50	3	1	43	1.29
35134--35218	38	2.2	38	85	4	109	51	7	3	37	1.46
35051--35218	76	2.2	75	80	11	175	50	5	2	41	1.40
41036--41064	14	2.0	15	93	6	51	0	17	0	82	0.66
46435--46519	38	2.2	38	89	0	125	30	5	21	42	1.76
47643--47704	31	2.0	31	93	0	106	37	14	24	24	1.93
48811--48848	11	3.5	11	89	3	60	55	0	0	44	0.99
54220--54258	20	2.0	20	90	10	62	2	12	7	76	1.09
54216--54264	26	2.0	24	84	15	64	2	12	8	77	1.07
54752--54830	3	26.7	3	85	2	106	65	0	1	32	1.00
55121--55788	113	5.9	113	92	0	1086	29	20	12	38	1.89
56419--57024	83	7.3	83	94	0	1002	35	21	13	30	1.91
57759--57804	19	2.7	16	83	10	56	52	8	6	32	1.58
58140--58176	18	2.0	19	89	5	58	8	10	0	81	0.89
68760--68796	15	2.7	15	88	12	53	62	8	5	24	1.44
68787--68837	18	2.9	17	75	16	50	72	1	0	25	0.95
70971--71092	3	42.3	3	76	15	116	63	0	3	32	1.10
70971--71091	14	8.9	14	78	13	110	64	0	3	32	1.10
70973--71092	23	5.0	23	80	12	118	64	0	3	32	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70982--71092	11	9.3	11	73	20	82	64	0	2	32	1.07
73405--73440	2	18.0	2	100	0	72	50	0	0	50	1.00
73735--73786	21	2.5	21	81	3	61	38	19	25	17	1.93
73775--73888	20	5.7	20	81	6	95	33	25	16	24	1.96
73754--73887	61	2.2	61	77	6	137	34	24	18	22	1.96
74380--74459	19	4.5	19	70	17	64	48	23	17	10	1.77
74455--74541	18	4.6	20	85	9	112	12	19	22	44	1.84
74455--74541	37	2.3	39	92	4	142	12	19	22	44	1.84
74455--74637	20	10.1	19	72	17	131	12	22	22	42	1.87
74474--74554	39	2.1	38	84	8	103	8	20	27	43	1.81
74526--74610	33	2.6	32	90	3	125	11	25	25	36	1.90
75188--75223	14	2.6	14	95	0	63	30	0	25	44	1.54
75400--75528	19	7.7	19	62	26	76	15	22	19	42	1.88
75399--75528	33	4.1	31	85	7	188	16	22	19	42	1.89
75398--75527	66	2.0	64	93	3	224	16	22	19	41	1.90
77811--77835	12	2.1	12	100	0	50	0	28	0	72	0.86
78007--78060	24	2.2	24	86	0	72	37	20	18	24	1.94
79104--79178	20	3.8	19	91	5	114	37	25	22	14	1.92
79104--79180	39	2.0	40	92	2	129	37	24	22	15	1.93
79204--79257	14	3.5	14	73	22	54	11	18	20	50	1.77
79186--79256	33	2.2	33	81	0	79	19	18	21	40	1.91
79199--79276	33	2.4	33	86	0	111	12	21	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81241--81307	19	3.5	19	83	4	89	37	23	23	14	1.93
81297--81351	14	3.8	13	76	19	56	47	27	16	9	1.76
81280--81356	31	2.4	33	89	8	124	46	24	18	10	1.80
81386--81443	14	3.9	14	79	16	71	10	17	24	48	1.78
81369--81459	32	2.8	33	94	3	166	12	18	21	47	1.81
81444--81486	19	2.3	19	84	8	52	18	23	20	37	1.94
81965--82009	18	2.5	18	85	0	63	15	15	42	26	1.87

Tables:   1

The End!