Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000007.1 Hibiscus syriacus cultivar Beakdansim tig00000013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109239

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17810--17835
3
8.7
3
100
0
52
34
0
0
65
0.93
17856--17880
13
1.9
13
100
0
50
80
0
0
20
0.72
25570--25604
18
1.9
18
88
0
52
25
31
20
22
1.98
26176--26336
64
2.5
65
82
7
188
26
19
19
34
1.96
26642--26683
19
2.3
18
84
12
50
38
21
4
35
1.75
28781--28837
24
2.4
24
84
0
78
50
17
12
19
1.77
28783--28842
12
5.0
12
74
8
50
48
18
13
20
1.81
29953--29987
18
1.9
18
88
0
52
28
17
0
54
1.43
31308--31351
13
3.5
13
90
6
72
15
25
43
15
1.87
31310--31348
12
3.2
12
92
3
60
17
23
43
15
1.87
35967--36044
31
2.5
31
82
0
93
39
11
12
35
1.80
36636--36714
31
2.5
31
87
0
95
32
12
15
39
1.85
39260--39332
24
3.0
24
93
2
119
41
4
10
43
1.59
45965--46008
22
1.9
24
86
9
65
11
22
4
61
1.48
57061--57088
2
14.0
2
100
0
56
50
0
0
50
1.00
57806--57874
10
7.1
10
76
12
72
18
23
30
27
1.98
57806--57876
19
3.7
19
88
5
90
18
25
29
26
1.98
57870--57910
17
2.4
17
95
0
73
17
41
24
17
1.89
57900--57936
7
5.4
7
93
6
67
16
29
29
24
1.96
57900--57932
13
2.5
13
95
5
57
15
30
30
24
1.95
65092--65160
10
7.1
10
77
12
81
18
23
28
28
1.98
65092--65162
19
3.7
19
90
5
99
18
25
28
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65157--65212
17
3.3
17
97
0
103
17
41
23
17
1.90
68402--68444
15
2.9
15
96
0
77
20
4
41
32
1.73
72750--72809
25
2.5
23
80
15
68
60
1
0
38
1.07
76192--76246
21
2.8
19
81
10
74
30
9
21
38
1.85
76305--76386
9
8.4
9
77
15
83
29
20
13
36
1.91
76314--76386
20
3.7
20
100
0
146
28
20
13
36
1.91
76323--76378
11
5.5
11
75
16
66
26
19
16
37
1.92
76402--76455
19
2.8
20
85
5
74
38
14
9
37
1.79
77591--77630
17
2.3
18
86
4
55
25
5
0
70
1.08
82895--82981
13
6.1
14
80
17
83
24
1
0
74
0.88
82904--82961
8
6.8
8
84
11
62
22
0
0
77
0.77
82894--82975
16
5.1
16
81
8
69
23
1
0
75
0.87
82922--82982
3
22.0
3
79
15
69
31
0
0
68
0.89
82930--82982
14
3.9
14
80
11
65
32
0
0
67
0.91
82923--82989
24
2.9
23
76
12
66
32
1
0
65
1.02
83960--84001
15
2.9
14
74
19
50
26
7
4
61
1.42
84326--84365
21
2.0
20
85
5
53
25
0
5
70
1.08
84371--84395
3
8.3
3
100
0
50
64
0
0
36
0.94
84789--84822
2
18.0
2
88
11
54
50
0
0
50
1.00
85313--85370
28
2.1
27
84
6
73
32
5
1
60
1.29
85313--85382
29
2.4
30
81
11
76
32
4
1
61
1.24
85350--85392
22
1.9
23
85
4
61
27
0
2
69
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86244--86311
35
1.9
36
87
3
102
42
14
11
30
1.82
89899--89928
8
3.8
8
90
0
51
43
0
6
50
1.28
93635--93803
75
2.3
75
88
0
239
30
15
21
32
1.94
95076--95127
22
2.4
22
90
0
77
36
9
13
40
1.77
95484--96034
112
4.9
113
88
2
774
37
15
19
27
1.92
95484--96278
112
6.9
113
82
8
772
38
15
19
26
1.92
95938--96278
123
2.8
123
84
6
417
39
14
19
26
1.90
96628--96667
6
6.7
6
100
0
80
15
15
0
70
1.18
96627--96734
6
17.3
6
82
12
58
18
5
2
73
1.16
96683--96747
8
8.1
8
71
19
55
26
0
3
70
1.01
96669--96738
14
4.7
15
80
15
74
22
0
2
74
0.95
96673--96752
3
28.0
3
74
12
62
26
1
2
70
1.08
98155--98205
14
3.6
14
77
12
52
31
0
1
66
1.03
99367--99447
5
15.8
5
75
14
67
19
1
2
76
0.97
100370--100506
68
2.0
68
98
0
265
27
16
8
46
1.77
102669--102809
29
5.0
28
82
10
78
44
17
3
34
1.65
102699--102953
29
8.7
29
86
5
244
46
16
3
32
1.65
102699--102953
87
2.9
88
80
4
291
46
16
3
32
1.65
104818--104859
17
2.4
18
92
4
68
26
2
0
71
0.98
104897--104934
15
2.6
15
88
12
53
26
2
0
71
1.00
105377--105466
23
3.9
24
92
4
141
27
22
23
26
1.99
105377--105466
47
1.9
46
90
2
144
27
22
23
26
1.99

Tables:   1

The End!