genome.fa.s70.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000070.1 Hibiscus syriacus cultivar Beakdansim tig00000122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69228

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--87	20	3.0	20	95	2	102	40	16	11	31	1.85
12--92	21	3.9	21	86	4	101	37	16	12	34	1.86
702--757	18	3.1	18	97	0	103	51	1	10	35	1.47
1115--1166	17	3.4	14	80	17	59	7	11	0	80	0.89
1116--1172	15	3.6	16	81	9	73	5	14	0	80	0.87
1116--1166	16	3.2	16	83	10	68	5	11	0	82	0.83
1130--1159	9	3.2	9	90	9	51	3	10	0	86	0.67
4627--4652	9	2.9	9	100	0	52	65	0	11	23	1.25
11592--11629	12	3.2	12	82	14	51	76	2	0	21	0.91
12616--12671	27	2.1	27	83	12	71	67	7	3	21	1.30
13921--14014	3	32.0	3	83	12	124	63	1	1	34	1.08
14978--15344	131	2.8	130	86	2	504	39	16	12	32	1.86
16556--16629	22	3.7	19	77	15	78	27	17	29	25	1.97
16556--16629	20	3.7	20	75	18	73	27	17	29	25	1.97
16652--16764	22	5.5	21	73	9	81	32	12	25	29	1.92
16671--16764	42	2.2	42	90	0	143	31	13	24	29	1.94
16651--16764	20	5.6	20	73	11	70	32	12	26	28	1.92
17315--17433	20	5.2	20	66	24	67	40	13	26	20	1.89
17326--17500	27	7.3	27	61	24	95	41	15	23	20	1.90
17655--17931	27	11.6	26	62	29	73	43	13	22	20	1.87
17776--17849	20	3.3	20	67	22	58	37	14	28	18	1.91
18019--18111	20	4.3	20	75	17	96	39	9	27	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17152--18091	47	20.0	47	91	0	1475	43	14	21	20	1.87
18019--18152	67	2.0	67	92	0	223	42	10	25	21	1.84
17880--18299	208	2.0	208	90	0	660	43	12	23	20	1.86
18080--18304	47	4.8	47	91	0	360	43	12	24	19	1.86
17964--18205	114	2.1	114	87	3	353	43	11	23	21	1.85
18192--18278	27	3.5	27	69	26	91	41	14	25	18	1.89
18172--18244	20	3.3	20	68	23	56	38	15	27	19	1.91
17917--18252	161	2.1	160	88	3	503	43	12	23	20	1.86
18698--18842	29	5.0	29	91	1	229	43	8	22	25	1.82
22621--22675	22	2.7	20	78	10	65	30	16	27	25	1.96
23113--23200	27	3.5	26	69	21	80	43	14	21	20	1.88
23078--23614	47	11.0	47	82	10	639	43	14	21	20	1.87
23138--23238	20	4.7	20	73	15	76	40	15	25	17	1.90
23138--23426	67	4.2	67	70	18	252	42	15	22	19	1.89
23091--23325	114	2.1	114	91	0	380	43	14	22	20	1.87
23078--23372	161	1.8	161	92	1	502	43	14	21	20	1.87
23319--23446	27	5.3	27	64	27	97	42	14	21	20	1.88
23584--23627	20	2.2	20	95	0	79	34	13	31	20	1.92
23534--23681	67	2.2	67	90	0	224	41	14	24	20	1.89
23592--23634	20	2.2	20	91	0	68	34	13	27	23	1.93
23602--23826	47	4.8	47	87	1	326	43	14	21	20	1.88
23488--23728	114	2.1	114	90	1	376	40	14	24	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24214--24329	29	4.0	29	93	0	178	43	6	23	26	1.79
26803--26835	3	11.0	3	87	12	50	66	0	3	30	1.06
27983--28258	134	2.1	134	99	0	543	16	22	12	48	1.79
30241--30341	33	3.2	33	62	16	86	23	15	22	37	1.93
30241--30364	62	2.0	62	100	0	248	25	12	20	40	1.89
51784--51836	18	2.8	20	88	5	74	32	28	9	30	1.88
58370--58425	21	2.7	21	91	2	96	37	26	14	21	1.92
60586--60619	13	2.5	13	90	4	50	55	5	14	23	1.61
60588--60625	20	1.9	20	94	0	67	55	5	15	23	1.61
65012--65209	60	3.3	60	85	0	254	30	22	5	41	1.77
65353--65421	30	2.3	29	92	2	111	37	2	30	28	1.72
67865--67905	20	2.0	20	86	9	57	58	14	9	17	1.62
68129--68178	25	2.0	25	96	0	91	46	28	16	10	1.78

Tables:   1

The End!