genome.fa.s700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000700.1 Hibiscus syriacus cultivar Beakdansim tig00001362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120924

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33--86	18	2.9	19	73	15	58	38	27	16	16	1.90
7212--7239	12	2.3	12	100	0	56	14	25	42	17	1.87
7230--7258	14	2.1	14	100	0	58	0	24	55	20	1.44
7255--7326	20	3.7	18	73	14	63	31	23	26	18	1.97
8276--8315	20	2.0	21	85	14	57	40	5	10	45	1.60
8524--8686	65	2.5	65	84	3	213	30	26	15	27	1.96
15221--15281	21	2.9	21	75	4	61	22	40	6	29	1.79
16077--16120	21	2.1	21	91	0	70	6	36	15	40	1.74
17167--17205	19	2.1	19	95	0	69	20	38	15	25	1.92
17153--17315	65	2.5	65	84	1	220	30	26	15	27	1.96
28608--28657	26	1.9	26	95	0	91	34	18	20	28	1.95
28625--28662	17	2.2	18	85	4	51	34	15	21	28	1.94
29879--30121	27	8.7	27	76	8	144	37	15	3	43	1.63
29879--30121	54	4.3	54	70	11	184	37	15	3	43	1.63
29892--30108	117	1.9	117	91	1	355	37	15	3	43	1.64
30025--30124	27	3.7	27	93	0	155	36	15	4	45	1.65
31553--31639	38	2.3	38	89	0	129	39	25	10	25	1.87
33180--33265	19	4.2	19	78	16	91	33	6	29	30	1.84
33705--33757	21	2.7	19	72	11	52	35	22	20	20	1.96
33677--33757	40	2.0	40	92	0	135	37	23	18	20	1.94
33680--33749	21	3.4	21	70	7	63	34	27	18	20	1.96
33699--33760	19	3.2	19	71	8	61	35	24	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33853--33891	19	2.1	19	90	0	60	25	15	28	30	1.96
34315--34352	2	19.0	2	100	0	76	50	0	50	0	1.00
36496--36530	7	5.0	7	100	0	70	28	42	14	14	1.84
44594--44674	23	3.5	23	96	0	144	29	22	28	19	1.98
49666--49721	23	2.4	23	90	0	85	32	23	26	17	1.97
51911--51935	13	1.9	13	100	0	50	68	0	32	0	0.90
54709--54769	23	2.7	23	89	0	95	29	29	24	16	1.96
62986--63326	180	1.9	180	91	0	556	32	8	18	40	1.80
65607--65640	2	17.0	2	100	0	68	50	0	0	50	1.00
65695--65796	27	3.7	27	65	22	68	34	18	2	44	1.65
65686--65813	58	2.2	58	100	0	256	31	17	6	45	1.73
70175--70300	42	3.0	42	72	4	119	26	29	5	38	1.79
70778--70956	54	3.3	54	86	1	243	15	27	25	31	1.95
70778--70956	27	6.6	27	84	0	196	15	27	25	31	1.95
70778--70956	81	2.2	81	81	2	216	15	27	25	31	1.95
85253--85356	23	4.8	21	81	9	95	20	29	21	28	1.98
85309--85354	22	2.1	22	100	0	92	17	39	21	21	1.93
85561--85621	30	2.0	30	90	6	97	40	4	11	42	1.62
91679--91741	21	2.9	21	85	4	81	22	36	23	17	1.95
94164--94224	30	2.0	30	90	6	97	40	4	11	42	1.62
95507--95546	13	2.9	14	88	7	55	35	12	7	45	1.70
96862--97636	389	2.0	389	97	0	1478	28	10	17	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102684--103424	53	13.9	53	88	3	949	22	27	18	31	1.97
103425--103509	37	2.3	37	97	0	161	21	20	15	43	1.88
104636--104672	6	6.3	6	90	6	58	0	2	13	83	0.74
104636--104672	11	3.3	11	92	3	56	0	2	13	83	0.74
104652--104733	19	4.3	18	82	13	85	0	18	2	79	0.84
104680--104733	9	5.9	9	89	10	83	0	20	0	79	0.73
104663--104733	9	7.7	9	82	6	79	0	21	0	78	0.74
104663--104733	28	2.6	27	86	6	97	0	21	0	78	0.74
113710--113740	15	2.1	15	100	0	62	51	0	22	25	1.48
116871--116911	21	2.0	21	100	0	82	39	2	14	43	1.59

Tables:   1

The End!