genome.fa.s7000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007000.1 Hibiscus syriacus cultivar Beakdansim tig00018060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143096

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9112--9145	4	8.5	4	93	0	59	47	23	2	26	1.66
23921--23978	29	2.0	29	93	0	98	20	13	17	48	1.81
29920--29986	33	2.0	33	100	0	134	46	14	14	23	1.83
32889--32961	36	1.9	36	84	13	94	54	15	24	5	1.61
36974--37161	38	5.5	33	68	20	102	13	9	35	40	1.78
36987--37058	38	1.9	37	88	2	108	15	9	34	40	1.80
36940--37157	101	2.2	101	88	3	314	15	10	33	40	1.81
37078--37161	38	2.2	37	85	2	114	11	9	40	38	1.75
37311--37381	37	1.9	37	91	0	115	16	11	30	40	1.84
38490--38568	21	3.6	21	75	12	77	31	24	20	24	1.98
39188--39224	6	6.2	6	100	0	74	0	16	48	35	1.46
39310--39350	21	2.0	21	95	0	73	29	24	24	21	1.99
39801--39838	14	2.7	14	87	0	58	15	0	13	71	1.16
41986--42041	27	2.1	27	100	0	112	37	0	10	51	1.37
42028--42056	2	15.0	2	92	7	51	51	0	0	48	1.00
42031--42057	13	2.1	13	100	0	54	55	0	0	44	0.99
50644--50707	30	2.1	32	85	8	89	43	1	1	53	1.19
55698--56066	20	18.5	20	85	4	458	34	26	18	20	1.96
56740--56786	24	2.0	24	87	8	69	25	14	21	38	1.92
59288--59592	19	17.4	19	79	16	356	47	18	20	14	1.82
59288--59614	33	9.5	34	76	14	203	47	18	20	14	1.83
59288--59540	52	4.8	52	86	7	262	47	18	19	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59354--59614	52	4.9	53	83	14	287	47	17	20	15	1.83
59621--59722	19	5.6	19	85	12	151	14	23	17	44	1.86
59828--59864	14	2.6	14	91	0	65	45	21	0	32	1.52
61818--61874	14	3.7	14	77	20	60	45	22	21	10	1.82
61799--61891	33	2.8	33	95	0	168	47	21	20	10	1.80
61762--61896	19	7.6	19	76	16	128	45	23	19	11	1.82
61892--62020	19	7.3	19	75	17	125	8	17	28	45	1.77
61892--61983	33	2.8	33	93	3	150	7	18	28	45	1.76
62064--62535	93	5.1	93	98	1	912	45	19	12	22	1.83
62064--62535	184	2.5	186	98	0	912	45	19	12	22	1.83
64238--64327	14	5.7	14	74	23	81	42	23	25	8	1.83
64230--64344	33	3.5	33	95	0	212	45	20	24	9	1.81
64237--64349	19	6.8	18	72	23	88	43	22	24	9	1.83
64361--64415	14	3.6	14	73	21	56	9	27	23	40	1.85
64535--64604	32	2.2	33	89	2	106	47	18	22	11	1.81
64786--64839	22	2.5	21	78	3	63	20	16	38	24	1.92
64985--65178	20	9.6	20	82	5	221	19	19	25	35	1.95
64985--65178	60	3.2	60	83	0	253	19	19	25	35	1.95
65171--65247	21	3.7	20	70	13	57	27	16	23	32	1.96
65233--65284	20	2.6	20	96	0	95	21	13	26	38	1.90
67574--67618	23	1.9	24	86	4	65	66	0	4	28	1.11
67667--67754	44	2.0	45	93	2	151	57	2	7	31	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73883--73964	30	2.7	30	86	3	112	35	17	21	25	1.95
74520--74581	23	2.7	23	73	9	63	32	17	29	20	1.96
79047--79150	29	3.6	29	97	0	190	37	23	13	25	1.91
79951--80125	75	2.3	75	83	0	197	31	17	27	23	1.97
86097--86136	21	1.9	21	85	10	55	60	2	2	35	1.24
86176--86230	29	1.9	28	81	3	65	45	7	0	47	1.30
90641--90668	13	2.2	13	100	0	56	42	7	7	42	1.59
90891--90964	31	2.3	32	83	2	96	43	36	10	9	1.72
92842--92879	17	2.2	17	86	13	51	28	0	2	68	1.03
96833--96865	17	2.0	17	88	5	50	60	0	0	39	0.97
96779--96885	25	4.2	24	71	18	74	56	1	1	40	1.21
96825--96902	24	3.2	23	75	14	68	55	1	2	41	1.22
97503--97567	31	2.1	31	88	0	94	47	9	7	35	1.64
106149--106189	21	2.0	21	86	9	59	48	0	7	43	1.30
107092--107125	17	2.0	17	100	0	68	41	5	11	41	1.66
107851--107900	20	2.5	20	93	3	84	50	8	18	24	1.73
108635--108749	60	1.9	60	83	3	151	37	13	13	36	1.83
109054--109087	18	1.9	18	88	5	52	61	2	0	35	1.11
116704--116756	2	26.5	2	100	0	106	49	0	0	50	1.00
117569--117660	48	1.9	48	84	2	123	17	13	25	44	1.84
117889--117939	16	3.2	16	82	0	66	9	11	29	49	1.72
117900--118002	16	6.5	16	71	6	57	8	13	29	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125635--125737	51	2.0	51	94	0	179	33	33	7	25	1.84
129913--129957	21	2.1	21	87	0	63	31	28	24	15	1.96

Tables:   1

The End!